It has become apparent that it is necessary for the database name to …

…match the 'species.production_name' meta_key - change the datacheck for this from advisory to critical.
Ensembl · Sep 18, 2020 · 9712770 · 9712770
1 parent 9b17356
commit 9712770
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Showing 2 changed files with 1 addition and 2 deletions.
diff --git a/lib/Bio/EnsEMBL/DataCheck/Checks/DatabaseSpeciesName.pm b/lib/Bio/EnsEMBL/DataCheck/Checks/DatabaseSpeciesName.pm
@@ -29,7 +29,6 @@ extends 'Bio::EnsEMBL::DataCheck::DbCheck';
 use constant {
   NAME           => 'DatabaseSpeciesName',
   DESCRIPTION    => 'The species.production_name meta key matches the DB name',
-  DATACHECK_TYPE => 'advisory',
   GROUPS         => ['core', 'corelike', 'funcgen', 'meta', 'variation'],
   DB_TYPES       => ['cdna', 'core', 'funcgen', 'otherfeatures', 'rnaseq', 'variation'],
   TABLES         => ['meta'],

diff --git a/lib/Bio/EnsEMBL/DataCheck/index.json b/lib/Bio/EnsEMBL/DataCheck/index.json
@@ -1041,7 +1041,7 @@
       "package_name" : "Bio::EnsEMBL::DataCheck::Checks::DatabaseCollation"
    },
    "DatabaseSpeciesName" : {
-      "datacheck_type" : "advisory",
+      "datacheck_type" : "critical",
       "description" : "The species.production_name meta key matches the DB name",
       "groups" : [
          "core",