Merge pull request #243 from Ensembl/feature/versioned_genes

Use the 'genebuild.method' meta key to test whether gene versions are…
Ensembl · Jun 10, 2020 · 97e8a1c · 97e8a1c
2 parents 71b1dbd + bfaa24f
commit 97e8a1c
Showing 1 changed file with 5 additions and 2 deletions.
diff --git a/lib/Bio/EnsEMBL/DataCheck/Checks/VersionedGenes.pm b/lib/Bio/EnsEMBL/DataCheck/Checks/VersionedGenes.pm
@@ -40,10 +40,13 @@ sub tests {
   my $species_id = $self->dba->species_id;
 
   my $mca = $self->dba->get_adaptor('MetaContainer');
-  my $division = $mca->get_division;
+  my $method = $mca->get_single_value_by_key('genebuild.method');
 
+  # If the geneset has been produced in-house, the 'method' meta_key
+  # will have one of the following values:
+  # full_genebuild, projection_build, mixed_strategy_build, maker_genebuild
   my $version_expected = 0;
-  if ($division eq 'EnsemblVertebrates') {
+  if ($method =~ /build/) {
     $version_expected = 1;
   }