Flip order of standard/high_mem analyses

It's a bit easier to read through a config file if the analyses are in the same order as the flow through the pipeline, i.e. high_mem ones should come after the standard analysis.
Ensembl · Jan 28, 2020 · b8e57fc · b8e57fc
1 parent c01eef0
commit b8e57fc
Showing 1 changed file with 11 additions and 13 deletions.
diff --git a/lib/Bio/EnsEMBL/DataCheck/Pipeline/DbDataChecks_conf.pm b/lib/Bio/EnsEMBL/DataCheck/Pipeline/DbDataChecks_conf.pm
@@ -200,26 +200,25 @@ sub pipeline_analyses {
     },
 
     {
-      -logic_name        => 'RunDataChecks_High_mem',  
+      -logic_name        => 'RunDataChecks',
       -module            => 'Bio::EnsEMBL::DataCheck::Pipeline::RunDataChecks',
       -analysis_capacity => 10,
       -max_retry_count   => 0,
-      -rc_name           => '8GB',
+      -rc_name           => '2GB',
       -flow_into         => {
                               '1' => ['StoreResults'],
+                             '-1' => ['RunDataChecks_High_mem']
                             },
-
     },
 
     {
-      -logic_name        => 'RunDataChecks',
+      -logic_name        => 'RunDataChecks_High_mem',  
       -module            => 'Bio::EnsEMBL::DataCheck::Pipeline::RunDataChecks',
       -analysis_capacity => 10,
       -max_retry_count   => 0,
-      -rc_name           => '2GB',
+      -rc_name           => '8GB',
       -flow_into         => {
                               '1' => ['StoreResults'],
-                              '-1' => ['RunDataChecks_High_mem']
                             },
     },
 
@@ -234,28 +233,27 @@ sub pipeline_analyses {
                               'A->1' => ['DataCheckFunnel'],
                             },
     },
-    
+
     {
-      -logic_name        => 'DataCheckFan_High_mem',
+      -logic_name        => 'DataCheckFan',
       -module            => 'Bio::EnsEMBL::DataCheck::Pipeline::DataCheckFan',
       -analysis_capacity => 100,
       -max_retry_count   => 0,
-      -rc_name           => '8GB',
+      -rc_name           => '2GB',
       -flow_into         => {
                               '1' => ['?accu_name=results&accu_address=[]'],
+                             '-1' => ['DataCheckFan_High_mem'] 
                             },
     },
 
-
     {
-      -logic_name        => 'DataCheckFan',
+      -logic_name        => 'DataCheckFan_High_mem',
       -module            => 'Bio::EnsEMBL::DataCheck::Pipeline::DataCheckFan',
       -analysis_capacity => 100,
       -max_retry_count   => 0,
-      -rc_name           => '2GB',
+      -rc_name           => '8GB',
       -flow_into         => {
                               '1' => ['?accu_name=results&accu_address=[]'],
-                              '-1' => ['DataCheckFan_High_mem'] 
                             },
     },