Check for absence of INSDC synonyms.

Ensembl · Jul 1, 2021 · d183823 · d183823
1 parent 597e897
commit d183823
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/lib/Bio/EnsEMBL/DataCheck/Checks/SeqRegionNamesINSDC.pm b/lib/Bio/EnsEMBL/DataCheck/Checks/SeqRegionNamesINSDC.pm
@@ -82,7 +82,7 @@ sub check_name_format {
       a.code = 'toplevel' AND
       sra.value = '1' AND
       sr.name NOT REGEXP '$format' AND
-      srs.synonym NOT REGEXP '$format' AND
+      (srs.synonym NOT REGEXP '$format' OR srs.synonym IS NULL) AND
       sr.name NOT LIKE 'LRG%' AND
       cs.species_id = $species_id
   /;