Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Reduce memory usage in ExonBounds datacheck #304

Merged
merged 1 commit into from
Sep 15, 2020

Conversation

james-monkeyshines
Copy link
Contributor

The ExonBounds datacheck was using vast amounts of memory when dealing with pig otherfeatures, which has 40 million exons... Use an iterator, rather loading everything into memory.

…g with pig otherfeatures, which has 40 million exons... Use an iterator, rather loading everything into memory.
@coveralls
Copy link

Pull Request Test Coverage Report for Build 1429

  • 0 of 0 changed or added relevant lines in 0 files are covered.
  • No unchanged relevant lines lost coverage.
  • Overall coverage remained the same at 96.002%

Totals Coverage Status
Change from base Build 1420: 0.0%
Covered Lines: 1873
Relevant Lines: 1951

💛 - Coveralls

@james-monkeyshines james-monkeyshines merged commit 4d5514d into release/103 Sep 15, 2020
@james-monkeyshines james-monkeyshines deleted the bugfix/exon_bounds branch September 15, 2020 16:01
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

3 participants