Merge release/104 fixes into master #368
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…or versioned Apollo based import builds
adding new "import_build" genebuild.method to use by metazoan cores for versioned Apollo based imports
…roup - databases that fail this datacheck can break biomart building, and cause web display problems.
…when assemblies are updated.
Update MetaKeyFormat url tests
Making the XrefTypes datacheck critical
Make Karyotype datacheck critical
…o make the queries a bit simpler. But it was failing to handle origin-spanning genes in bacterial circular regions; so need to be a bit more long-winded, to account for those.
…g has gone wrong, output might not be written. This would get picked up and reported when the run completes - but the jobs for converting to json were failing before then, and the datacheck process was left hanging. So, make that step robust to the absence of output.
Making conversion of output to json more robust
Accepted, it's clearer that way. Co-authored-by: Luca Da Rin Fioretto <radome@gmail.com>
ExonBounds fix for circular chromosomes
add MD5 so that string comparison is case sensitive
Remove analysis db_version check from all groups
Report bug fix from PR #344 on release 104
…h core and variation dbs are needed within a datacheck.
Make old_dba retrieval more robust
Added repeat detector to the list of logic names to be skipped under repeat.analysis meta keys.
hot_fix/repeatdetector_metakey
Restrict checking of karyotype_rank on chromosomes to current assembly.
…asking Division-specific repeatmasking
Pull Request Test Coverage Report for Build 1679
💛 - Coveralls |
luca-drf
approved these changes
May 11, 2021
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