Release/108 #482
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Release/108 #482
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Release/106
Yearly copyright update
Example: Xenopus laevis (J_2021) - GCA_017654675.1
Example: Xenopus laevis (J_2021) - GCA_017654675.1
Use git ensembl to clone repos.
Allow for _ to be part of the display name format.
…ter_105 Allow for _ to be part of the display name format.
We'd like to use "," to separate common name from the strain in the species display name
Update DisplayNameFormat.pm
…ase/105 Update DisplayNameFormat.pm -- use "," (release/105)
Merge back before branching
Adding support for "." and "#" to the display_name pattern for the DisplayNameFormat DC
Adding support for "." and "#" to the display_name pattern for the DisplayNameFormat DC
DisplayNameFormat support for "." and "#" main
DisplayNameFormat support for "." and "#" (105)
Adding support for "." and "#" to the display_name pattern for the DisplayNameFormat DC
DisplayNameFormat support for "." and "#" (107)
Updating test DBs to 107
…les. Extended tests to Metazoa / Plants / Vertebrates group
Bugfix/compara species url
Fixed cmp_ok error when '=' ==> '=='
…pts in protein_coding genes
Added protein_coding_LoF as an allowed biotype for canonical transcri…
…ants Allowing subspecies for plants division
Production module DbFactory list the dbname for given species list. If dbname not found in registry file pipeline wont result in failure. This new param shout_db_not_found_in_registry helps to set the pipeline status to fail when dbs not found in registry.
Added new param shout_db_not_found_in_registry
New compara gene tree specific pipeline group
Release/107 - bugfixes merge
Added PERL 5.26 to the build
New regulation checks
Report back bugfixes and updates from 106 branch
Merge back 106 to 107 for backward compatibility
Fix for Unknown option: shout_db_not_found_in_registry
default value set for param shout_db_not_found_in_registry
Update DbDataChecks_conf.pm
Merge pull request #475 from Ensembl/release/106
Updating test dbs to latest schema
changed anno condition
Pull Request Test Coverage Report for Build 2165
💛 - Coveralls |
vinay-ebi
approved these changes
May 27, 2022
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Merge last bugfixes and update to current RR branch