Add datacheck CactusMetadataConsistency #560
Merged
Travis CI / Travis CI - Pull Request
succeeded
Sep 4, 2023 in 6m 53s
Build Passed
Details
This is a pull request build.
It is running a build against the merge commit, after merging #560 Add datacheck CactusMetadataConsistency.
Any changes that have been made to the main branch before the build ran are also included.
Jobs and Stages
This build has two jobs, running in parallel.
| Job | Perl | ENV | OS | State |
|---|---|---|---|---|
| 2435.1 |
5.14 | COVERALLS=true DB=mysql | Linux | passed |
| 2435.2 |
5.26 | COVERALLS=true DB=mysql | Linux | passed |
Build Configuration
| Build Option | Setting |
|---|---|
| Language | Perl |
| Operating System | Linux (Trusty) |
| Perl Versions | 5.14, 5.26 |
Build Configuration
{
"language": "perl",
"os": [
"linux"
],
"dist": "trusty",
"perl": [
"5.14",
"5.26"
],
"env": [
"jobs={:COVERALLS=>\"true\", :DB=>\"mysql\"}"
],
"sudo": false,
"addons": {
"apt": {
"packages": [
"unzip",
"sendmail",
"graphviz"
]
}
},
"before_install": [
"git clone --depth 1 https://github.com/Ensembl/ensembl-git-tools.git",
"export PATH=$PATH:$PWD/ensembl-git-tools/bin",
"export ENSEMBL_BRANCH=master",
"export SECONDARY_BRANCH=main",
"echo \"TRAVIS_BRANCH=$TRAVIS_BRANCH\"",
"if [[ $TRAVIS_BRANCH =~ ^release\\/[0-9]+$ ]]; then export ENSEMBL_BRANCH=$TRAVIS_BRANCH; export SECONDARY_BRANCH=$TRAVIS_BRANCH; fi",
"echo \"ENSEMBL_BRANCH=$ENSEMBL_BRANCH\"",
"echo \"SECONDARY_BRANCH=$SECONDARY_BRANCH\"",
"git-ensembl --clone --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH --depth 1 ensembl-test",
"git-ensembl --clone --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH --depth 1 ensembl",
"git-ensembl --clone --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH --depth 1 ensembl-compara",
"git-ensembl --clone --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH --depth 1 ensembl-datacheck",
"git-ensembl --clone --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH --depth 1 ensembl-variation",
"git-ensembl --clone --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH --depth 1 ensembl-metadata",
"git-ensembl --clone --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH --depth 1 ensembl-funcgen",
"git-ensembl --clone --branch master --secondary_branch version/2.6 --depth 1 ensembl-hive",
"git-ensembl --clone --branch master --secondary_branch main --depth 1 ensembl-orm",
"git-ensembl --clone --branch master --secondary_branch main --depth 1 ensembl-taxonomy",
"git clone --branch 1.9 --depth 1 https://github.com/samtools/htslib.git",
"git clone --branch release-1-6-924 --depth 1 https://github.com/bioperl/bioperl-live.git"
],
"install": [
"cpanm --installdeps --with-recommends --notest --cpanfile ensembl/cpanfile .",
"cpanm --installdeps --notest --cpanfile ensembl-hive/cpanfile .",
"cpanm --installdeps --notest .",
"cpanm -n Devel::Cover::Report::Coveralls",
"cp travisci/MultiTestDB.conf.travisci.mysql t/MultiTestDB.conf.mysql"
],
"script": [
"./travisci/harness.sh"
],
"notifications": {
"email": [
{
"on_success": "always",
"on_failure": "always"
}
],
"slack": [
{
"rooms": [
{
"secure": "BkrSPAkOM5aTOpeyO9vZnHdZ0LF1PLk0r2HtcXN2eTMyiHoGXkl6VUjdAL8EkzI4gunW2GProdSIjHpf60WdiEmKAulMdJRI+xyUbuxnY31mwiikS9HYwqmPBbMTf0Mh2pMBngZRFs+gaFZDUMTfLfp+8MQfU1R54yb6hPuVt5I="
}
]
}
]
}
}
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