bugfix: beekeeper needs a config option turned on to clean up the tem…

…p directories

t/03.scripts/beekeeper_big_red_button.json

@@ -0,0 +1,5 @@
+{
+    "Meadow" : {
+        "CleanupTempDirectoryKilledWorkers" : 1
+    }
+}

t/03.scripts/beekeeper_big_red_button.t

@@ -34,6 +34,10 @@ $ENV{'EHIVE_ROOT_DIR'} //=
   ) );
 my $local_module_path = $ENV{'EHIVE_ROOT_DIR'}.'/t/03.scripts/';
 
+# The JSON config file to set CleanupTempDirectoryKilledWorkers to 1
+my $json_config = $PROGRAM_NAME;
+$json_config =~ s/\.t$/.json/;
+
 # The name of the file that will be created in the temp directory
 my $test_filename = 'foo';
 
@@ -58,11 +62,12 @@ my $pipeline_url = get_test_url_or_die();
 my $hive_dba =
     Bio::EnsEMBL::Hive::DBSQL::DBAdaptor->new( -url => $pipeline_url );
 
+my $big_red_button_options = [ '-big_red_button', '-config_file', $json_config ];
 # Check that the -big_red_button is recognised. Of course if it is it
 # will trigger the shutdown - but all it does at this point is
 # Beekeeper blocking itself, which has no effect because it doesn't
 # actually try to run anything.
-beekeeper( $pipeline_url, [ '-big_red_button' ], "beekeper.pl recognises option '-big_red_button'" );
+beekeeper( $pipeline_url, $big_red_button_options, "beekeper.pl recognises option '-big_red_button'" );
 
 # This will both spawn a worker to claim a job and register another
 # beekeeper with the pipeline. Ideally we would run this one in loop
@@ -87,7 +92,7 @@ my $hello_path = "$temp_directory_name/$test_filename";
 ok(-s $hello_path, "$hello_path file has been populated");
 
 # Now trigger the shutdown for real
-beekeeper( $pipeline_url, [ '-big_red_button' ], 'Pipeline shutdown triggered without errors' );
+beekeeper( $pipeline_url, $big_red_button_options, 'Pipeline shutdown triggered without errors' );
 # Give the worker(s) some time to die
 sleep(10);