bugfix: remove the single-quotes around all inclusions of EHIVE_TMP_P…

…ASSWORD_ The regexp had not been updated to match the new way of setting the password for MySQL databases. Also, it never worked for PostgreSQL :/
Ensembl · Jan 4, 2017 · 89fef56 · 89fef56
1 parent ad5c1f7
commit 89fef56
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/Bio/EnsEMBL/Hive/RunnableDB/DbCmd.pm b/modules/Bio/EnsEMBL/Hive/RunnableDB/DbCmd.pm
@@ -168,7 +168,7 @@ sub fetch_input {
 
     if ($need_a_shell) {
         my ($join_needed, $flat_cmd) = join_command_args(\@cmd);
-        $flat_cmd =~ s/ '(-p\$EHIVE_TMP_PASSWORD_\d+)' / $1 /g;
+        $flat_cmd =~ s/ '(\S*\$EHIVE_TMP_PASSWORD_\d+)' / $1 /g;
         $self->param('cmd', $prefix.$flat_cmd.$postfix);
     } else {
         $self->param('cmd', \@cmd);