Merge pull request #69 from Ensembl/108_versionbump

Update release version to 108
Ensembl · May 16, 2022 · 174369f · 174369f
2 parents f669c54 + 41142b3
commit 174369f
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Showing 6 changed files with 13 additions and 9 deletions.
diff --git a/modules/t/test-genome-DBs/homo_sapiens/core/meta.txt b/modules/t/test-genome-DBs/homo_sapiens/core/meta.txt
@@ -1,4 +1,4 @@
-1	\N	schema_version	107
+1	\N	schema_version	108
 2	1	assembly.default	NCBI34
 3	1	species.taxonomy_id	9606
 26	1	species.classification	Homo sapiens
@@ -123,3 +123,4 @@
 197	\N	patch	patch_105_106_a.sql|schema_version
 198	\N	patch	patch_106_107_a.sql|schema_version
 199	\N	patch	patch_106_107_b.sql|Added index for seq_region_mapping
+200	\N	patch	patch_107_108_a.sql|schema_version
diff --git a/modules/t/test-genome-DBs/homo_sapiens/core/table.sql b/modules/t/test-genome-DBs/homo_sapiens/core/table.sql
@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=200 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=201 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',

diff --git a/modules/t/test-genome-DBs/multi/compara/meta.txt b/modules/t/test-genome-DBs/multi/compara/meta.txt
@@ -1,4 +1,4 @@
-95	\N	schema_version	107
+98	\N	schema_version	108
 2	\N	schema_type	compara
 3	\N	patch	patch_84_85_a.sql|schema_version
 4	\N	patch	patch_84_85_b.sql|gene_tree_root_attr
@@ -74,3 +74,5 @@
 93	\N	patch	patch_105_106_a.sql|schema_version
 94	\N	patch	patch_105_106_b.sql|clusterset_id_varchar50
 96	\N	patch	patch_106_107_a.sql|schema_version
+97	\N	patch	patch_106_107_b.sql|case_sensitive_stable_id
+99	\N	patch	patch_107_108_a.sql|schema_version
diff --git a/modules/t/test-genome-DBs/multi/compara/table.sql b/modules/t/test-genome-DBs/multi/compara/table.sql
@@ -138,7 +138,7 @@ CREATE TABLE `gene_align_member` (
 
 CREATE TABLE `gene_member` (
   `gene_member_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
-  `stable_id` varchar(128) NOT NULL,
+  `stable_id` varchar(128) CHARACTER SET latin1 COLLATE latin1_bin NOT NULL,
   `version` int(10) unsigned DEFAULT '0',
   `source_name` enum('ENSEMBLGENE','EXTERNALGENE') NOT NULL,
   `taxon_id` int(10) unsigned NOT NULL,
@@ -176,7 +176,7 @@ CREATE TABLE `gene_member_hom_stats` (
 ) ENGINE=MyISAM DEFAULT CHARSET=latin1;
 
 CREATE TABLE `gene_member_qc` (
-  `gene_member_stable_id` varchar(128) NOT NULL,
+  `gene_member_stable_id` varchar(128) CHARACTER SET latin1 COLLATE latin1_bin NOT NULL,
   `genome_db_id` int(10) unsigned NOT NULL,
   `seq_member_id` int(10) unsigned DEFAULT NULL,
   `n_species` int(11) DEFAULT NULL,
@@ -436,7 +436,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`(255)),
   KEY `species_value_idx` (`species_id`,`meta_value`(255))
-) ENGINE=MyISAM AUTO_INCREMENT=97 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=100 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `method_link` (
   `method_link_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
@@ -540,7 +540,7 @@ CREATE TABLE `peptide_align_feature` (
 
 CREATE TABLE `seq_member` (
   `seq_member_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
-  `stable_id` varchar(128) NOT NULL,
+  `stable_id` varchar(128) CHARACTER SET latin1 COLLATE latin1_bin NOT NULL,
   `version` int(10) unsigned DEFAULT '0',
   `source_name` enum('ENSEMBLPEP','ENSEMBLTRANS','Uniprot/SPTREMBL','Uniprot/SWISSPROT','EXTERNALPEP','EXTERNALTRANS','EXTERNALCDS') NOT NULL,
   `taxon_id` int(10) unsigned NOT NULL,

diff --git a/modules/t/test-genome-DBs/mus_musculus/core/meta.txt b/modules/t/test-genome-DBs/mus_musculus/core/meta.txt
@@ -1,5 +1,5 @@
 1	\N	schema_type	core
-2	\N	schema_version	107
+2	\N	schema_version	108
 3	\N	patch	patch_65_66_a.sql|schema_version
 4	\N	patch	patch_65_66_b.sql|fix_external_db_id
 5	\N	patch	patch_65_66_c.sql|reorder_unmapped_obj_index
@@ -201,3 +201,4 @@
 1713	\N	patch	patch_105_106_a.sql|schema_version
 1714	\N	patch	patch_106_107_a.sql|schema_version
 1715	\N	patch	patch_106_107_b.sql|Added index for seq_region_mapping
+1716	\N	patch	patch_107_108_a.sql|schema_version
diff --git a/modules/t/test-genome-DBs/mus_musculus/core/table.sql b/modules/t/test-genome-DBs/mus_musculus/core/table.sql
@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=1716 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=1717 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',