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Merge 22a3779 into af8be2a
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nwillhoft committed May 10, 2023
2 parents af8be2a + 22a3779 commit 5dbed80
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Showing 6 changed files with 9 additions and 6 deletions.
3 changes: 2 additions & 1 deletion modules/t/test-genome-DBs/homo_sapiens/core/meta.txt
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@@ -1,4 +1,4 @@
1 \N schema_version 110
1 \N schema_version 111
2 1 assembly.default NCBI34
3 1 species.taxonomy_id 9606
26 1 species.classification Homo sapiens
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203 \N patch patch_109_110_a.sql|schema_version
204 \N patch patch_109_110_b.sql|Add IS_PAR relationship to link X- and Y-PAR genes
205 \N patch patch_109_110_c.sql|Allow gene id to belong to multiple alt allele groups
206 \N patch patch_110_111_a.sql|schema_version
2 changes: 1 addition & 1 deletion modules/t/test-genome-DBs/homo_sapiens/core/table.sql
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Expand Up @@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=206 DEFAULT CHARSET=latin1 ROW_FORMAT=DYNAMIC;
) ENGINE=MyISAM AUTO_INCREMENT=207 DEFAULT CHARSET=latin1 ROW_FORMAT=DYNAMIC;

CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
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3 changes: 2 additions & 1 deletion modules/t/test-genome-DBs/multi/compara/meta.txt
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@@ -1,4 +1,4 @@
107 \N schema_version 110
111 \N schema_version 111
2 \N schema_type compara
3 \N patch patch_84_85_a.sql|schema_version
4 \N patch patch_84_85_b.sql|gene_tree_root_attr
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108 \N patch patch_109_110_a.sql|schema_version
109 \N patch patch_109_110_b.sql|case_insensitive_stable_id_again
110 \N patch patch_109_110_c.sql|ncbi_taxa_name_varchar500
112 \N patch patch_110_111_a.sql|schema_version
2 changes: 1 addition & 1 deletion modules/t/test-genome-DBs/multi/compara/table.sql
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Expand Up @@ -437,7 +437,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`(255)),
KEY `species_value_idx` (`species_id`,`meta_value`(255))
) ENGINE=MyISAM AUTO_INCREMENT=111 DEFAULT CHARSET=latin1 ROW_FORMAT=DYNAMIC;
) ENGINE=MyISAM AUTO_INCREMENT=113 DEFAULT CHARSET=latin1 ROW_FORMAT=DYNAMIC;

CREATE TABLE `method_link` (
`method_link_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
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3 changes: 2 additions & 1 deletion modules/t/test-genome-DBs/mus_musculus/core/meta.txt
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@@ -1,5 +1,5 @@
1 \N schema_type core
2 \N schema_version 110
2 \N schema_version 111
3 \N patch patch_65_66_a.sql|schema_version
4 \N patch patch_65_66_b.sql|fix_external_db_id
5 \N patch patch_65_66_c.sql|reorder_unmapped_obj_index
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1719 \N patch patch_109_110_a.sql|schema_version
1720 \N patch patch_109_110_b.sql|Add IS_PAR relationship to link X- and Y-PAR genes
1721 \N patch patch_109_110_c.sql|Allow gene id to belong to multiple alt allele groups
1722 \N patch patch_110_111_a.sql|schema_version
2 changes: 1 addition & 1 deletion modules/t/test-genome-DBs/mus_musculus/core/table.sql
Original file line number Diff line number Diff line change
Expand Up @@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=1722 DEFAULT CHARSET=latin1 ROW_FORMAT=DYNAMIC;
) ENGINE=MyISAM AUTO_INCREMENT=1723 DEFAULT CHARSET=latin1 ROW_FORMAT=DYNAMIC;

CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
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