Test commpresed blob import

Ensembl · Sep 14, 2020 · a4e9ace · a4e9ace
1 parent e2e286b
commit a4e9ace
Showing 1 changed file with 10 additions and 3 deletions.
diff --git a/modules/Bio/EnsEMBL/Test/MultiTestDB/mysql.pm b/modules/Bio/EnsEMBL/Test/MultiTestDB/mysql.pm
@@ -42,9 +42,16 @@ use base 'Bio::EnsEMBL::Test::MultiTestDB';
 
 sub load_txt_dump {
     my ($self, $txt_file, $tablename, $db) = @_;
-    my $load = sprintf(q{LOAD DATA LOCAL INFILE '%s' INTO TABLE `%s` FIELDS ESCAPED BY '\\\\'}, $txt_file, $tablename);
-    $db->do($load);
-    return $db;
+    if($txt_file eq 'compressed_genotype_var') {
+    	my $load = sprintf(q{LOAD DATA LOCAL INFILE '%s' INTO TABLE `%s` (variation_id, subsnp_id, @var1) FIELDS ESCAPED BY '\\\\' SET genotypes = UNHEX(@var1)}, $txt_file, $tablename);
+    	$db->do($load);
+    	return $db;
+    } else {
+    	my $load = sprintf(q{LOAD DATA LOCAL INFILE '%s' INTO TABLE `%s` FIELDS ESCAPED BY '\\\\'}, $txt_file, $tablename);
+    	$db->do($load);
+    	return $db;
+    }
+
 }
 
 sub create_and_use_db {