Disconnect connection to hive database if not used. This is to avoid …

…getting a failed job if it has been running for more than 8h
Ensembl · Jul 26, 2017 · 73801c8 · 73801c8
1 parent 76df543
commit 73801c8
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/modules/Bio/EnsEMBL/Variation/Pipeline/ReleaseDataDumps/SubmitJob.pm b/modules/Bio/EnsEMBL/Variation/Pipeline/ReleaseDataDumps/SubmitJob.pm
@@ -48,6 +48,9 @@ sub run {
   my $err = $self->param('err');
   my $out = $self->param('out');
 
+  my $hive_dbc = $self->dbc;
+  $hive_dbc->disconnect_if_idle();
+
   my $cmd = "perl $script " . join(' ', @args); 
   $self->warning($cmd);
   $self->run_cmd("$cmd 1>$out 2>$err");