Update release dump data dir from noah #1060
Merged
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We have an update to use FASTA and ancestral allele in the release dump pipeline from this commit -
#491
They are not mandatory parameter as only supposed to be used with human. But AA seems to be necessary as we do need correcting of AA for indels.
The location of these files can be passed to the pipeline using
data_dir
parameter. Current default value is of a noah dir - this PR updates it to the equivalent codon dir.To be able to use this we should update the data_dir with updated files. Check updated docs here -
https://www.ebi.ac.uk/seqdb/confluence/display/EV/Dump+GVF+and+VCF+for+a+new+e%21+and+EG+releases#DumpGVFandVCFforanewe!andEGreleases-Beforerunningthepipeline
Test
rice - http://guihive.ebi.ac.uk:8080/versions/96/?driver=mysql&username=ensadmin&host=mysql-ens-var-prod-4&port=4694&dbname=snhossain_dumps_oryza_sativa_110&passwd=xxxxx
human - http://guihive.ebi.ac.uk:8080/versions/96/?driver=mysql&username=ensadmin&host=mysql-ens-var-prod-4&port=4694&dbname=snhossain_dumps_homo_sapiens_110&passwd=xxxxx