Revert "fix Uploaded_variation"

Ensembl · Jan 9, 2018 · 718e90e · 718e90e
1 parent e34bc9f
commit 718e90e
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/modules/Bio/EnsEMBL/VEP/OutputFactory.pm b/modules/Bio/EnsEMBL/VEP/OutputFactory.pm
@@ -780,7 +780,7 @@ sub VariationFeature_to_output_hash {
   my $vf = shift;
 
   my $hash = {
-    Uploaded_variation  => $vf->variation_name ne '.' ? $vf->variation_name : ($vf->{original_chr} || $vf->{chr}).'_'.$vf->{start}.'_'.($vf->{allele_string} || $vf->{class_SO_term}),
+    Uploaded_variation  => $vf->variation_name,
     Location            => ($vf->{chr} || $vf->seq_region_name).':'.format_coords($vf->{start}, $vf->{end}),
   };
 

diff --git a/t/OutputFactory.t b/t/OutputFactory.t
@@ -1593,7 +1593,7 @@ is_deeply(
       ],
       'MINIMISED' => 1,
       'Feature_type' => 'Transcript',
-      'Uploaded_variation' => '21_25741665_CAGAAGAAAG/TAGAAGAAAG/C',
+      'Uploaded_variation' => '.',
       'Allele' => '-',
       'CDS_position' => '68-76',
       'Gene' => 'ENSG00000154727',
@@ -1612,7 +1612,7 @@ is_deeply(
       ],
       'MINIMISED' => 1,
       'Feature_type' => 'Transcript',
-      'Uploaded_variation' => '21_25741665_CAGAAGAAAG/TAGAAGAAAG/C',
+      'Uploaded_variation' => '.',
       'Allele' => 'T',
       'CDS_position' => 67,
       'Gene' => 'ENSG00000154727',
@@ -1817,4 +1817,4 @@ sub get_annotated_buffer_runner {
   $ib->finish_annotation();
 
   return $runner;
-}
+}