Revert default database setting

Ensembl · Nov 24, 2022 · 747b5db · 747b5db
1 parent 1bbac68
commit 747b5db
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/modules/Bio/EnsEMBL/VEP/Config.pm b/modules/Bio/EnsEMBL/VEP/Config.pm
@@ -70,7 +70,7 @@ use base qw(Bio::EnsEMBL::VEP::BaseVEP);
 our %DEFAULTS = (  
 
   # database settings
-  database          => 0,
+  database          => 1,
   host              => 'ensembldb.ensembl.org',
   user              => 'anonymous',
   port              => 3306,

diff --git a/vep b/vep
@@ -222,6 +222,8 @@ warn("WARNING: More than one output file command-line flag provided. Using the l
 $config->{output_file}=@{$config->{output_file}}[-1] if ($config->{output_file});
 &usage && exit(0) if (!$arg_count) || $config->{help};
 
+$config->{database} ||= 0;
+
 my $runner = Bio::EnsEMBL::VEP::Runner->new($config);
 
 if($config->{show_cache_info}) {