Merge 754cca9 into 2efa0d6

Ensembl · Sep 27, 2018 · f88aa15 · f88aa15
2 parents 2efa0d6 + 754cca9
commit f88aa15
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/Bio/EnsEMBL/VEP/AnnotationSource/File.pm b/modules/Bio/EnsEMBL/VEP/AnnotationSource/File.pm
@@ -289,7 +289,7 @@ sub annotate_InputBuffer {
         $parser->next();
       }
 
-      while($parser->{record} && $parser->get_start <= $vf_end + 1) {
+      while($parser->{record} && $parser->get_seqname eq $self->get_source_chr_name($chr) && $parser->get_start <= $vf_end + 1) {
         $self->annotate_VariationFeature($vf);
         $parser->next();
       }