This package provides functions to extract and visualize the phylogenetic factors in biological datasets. To get started, download R and Rtools. In R, you first need to download two packages from Bioconductor:
source("https://bioconductor.org/biocLite.R")
biocLite("Biostrings")
biocLite("ggtree")
Now, you're ready to download the \code{phylofactor} packsage using \code{devtools}:
devtools::install_github('reptalex/phylofactor')
The help functions in this package contain a decent amount of detail for how to perform phylofactorization.
? PhyloFactor
? gpf
For more detailed information, a tutorial is available online here. If you have any questions, please feel free to post issues and contact me!