❤️ alignment-free support values
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Readme.md

AFRA — Alignment-Free Support Values

This program computes support values from distance matrices without the need for a multiple sequence-alignment.

Compilation Instructions

Execute the following steps to create your own version of afra.

% autoreconf -i # optional when building from tarball
% ./configure
% make
% make install # optional, may require sudo

You should now have a afra executable ready for usage.

% ./afra --mode quartet foo.mat
(((Seq0:-0.113017,Seq4:0.645317)100:0.084738,Seq1:-0.069237)50:0.053837,Seq3:0.354563,Seq2:0.093537);

Citing

This is scientific software. It is described in the article Support Values for Genome Phylogenies by Fabian Klötzl and Bernhard Haubold (2016). Please cite appropriately.

License

Copyright (C) 2015 - 2016 Fabian Klötzl

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.

Contact

In case of bugs or unexpected errors don't hesitate to send me a mail: kloetzl@evolbio.mpg.de