FASTAptamer v1.0.14

Restored missing input file error message in fastaptamer_count (i.e. fixed bug introduced in 1.0.13)

Removed tests' dependencies on non-core Perl modules.

FASTAptamer v1.0.13

With this version, fastaptamer_count will automatically decompress its input file if it ends in ".gz".

FASTAptamer v1.0.12

Implemented fastaptamer_cluster_xs as faster version of fastaptamer_cluster (thanks vladimirkhramkov!). Please note that fastaptamer_cluster_xs is an optional version of fastaptamer_cluster which can only be used if the Third-party module Text::LevenshteinXS is installed.

FASTAptamer v1.0.11.

Now fastaptamer_count will accept FASTA formatted files as input when the -f flag is used.

Unique sequence name format now ">RANK(UNIQ)-READS-RPM"

If the -u flag is chosen when running fastaptamer_count, each sequence will have a unique name in the format ">RANK(UNIQ)-READS-RPM" where UNIQ is an integer that increases for each identically ranked sequence that is distinct.

FASTAptamer v1.0.7.

More robust FASTQ reading. New fastaptamer_count -u option for unique sequence IDs from fastaptamer_count.

Do not use

Replaced by v1.0.7 for bug fixes

v1.0.4 Reduced memory footprint

Merge pull request #3 from molecules/master

Significant memory improvement. Added two tests for fastaptamer_cluster.

FASTAptamer v1.0.3

Merge pull request #1 from molecules/master

Added maximum clusters option