🔖 cpac v0.3.2: pull/upgrade; support C-PAC v1.8

[shnizzedy]

Fixes

Fixes #2
Fixes #3
Fixes #8

Description

• ➖ Remove dependecy on Nipype
• 🐛 Pass commandline arguments through to cpac crash
• 🚸 Add pull / upgrade command
• ⚡️🐳 Stop Docker containers when finished
• 👽 Handle changes from C-PAC 1.7 to 1.8

Tests

• 👷 Move tests from Travis to GitHub Actions
• 👷 Refactored tests to run on a matrix of [Docker, Singularity] × C-PAC v[1.7, 1.8] × Python [3.6, 3.7, 3.8]
  To do:
  • Debug Singularity pull from Docker Hub in GitHub action. It works for me locally and on AWS, but consistently runs out of space on GitHub Actions:

  FATAL:   While making image from oci registry: error fetching image to cache: while building SIF from layers: packer failed to pack: while unpacking tmpfs: error unpacking rootfs: unpack layer: unpack entry: usr/local/miniconda/lib/python3.7/site-packages/torch/lib/libtorch.so: unpack to regular file: short write: write /tmp/build-temp-279665709/rootfs/usr/local/miniconda/lib/python3.7/site-packages/torch/lib/libtorch.so: no space left on device

  (e.g., https://github.com/FCP-INDI/cpac/runs/2081157871)

Checklist

• My pull request has a descriptive title (not a vague title like Update index.md).
• My pull request targets the primary branch of the repository.
• My commit messages follow best practices.
• My code follows the established code style of the repository.
• I added tests for the changes I made.
• I updated the changelog.
• I added or updated documentation: 📝 Document nested config changes fcp-indi.github.io#248
• I tried running the project locally and verified that there are no
  visible errors.

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