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pl-img2dcm

https://img.shields.io/docker/v/fnndsc/pl-img2dcm?sort=semver https://img.shields.io/github/license/fnndsc/pl-img2dcm

An app to convert an input image to a DICOM format

img2dcm is a ChRIS ds-type is an app that simply converts an input image (jpg/png) to a DICOM format. It does require a base/reference DICOM image from which to import the tag header information.

docker run --rm fnndsc/pl-img2dcm img2dcm
    [-i|--inputImageFilter <imageFilter>]
    [-d|--inputDCMFilter <dicomFilter>]
    [-h|--help]
    [--json] [--man] [--meta]
    [--savejson <DIR>]
    [-v|--verbosity <level>]
    [--version]
    <inputDir> <outputDir>
[-i|--inputImageFilter <imageFilter>]
A glob pattern string, default is "**/*.png", representing the input
file pattern to analyze.

[-d|--inputDCMFilter <dicomFilter>]
A glob pattern string, default is "**/*.dcm", representing the input
dicom files to fetch tags.

[-h] [--help]
If specified, show help message and exit.

[--json]
If specified, show json representation of app and exit.

[--man]
If specified, print (this) man page and exit.

[--meta]
If specified, print plugin meta data and exit.

[--savejson <DIR>]
If specified, save json representation file to DIR and exit.

[-v <level>] [--verbosity <level>]
Verbosity level for app. Not used currently.

[--version]
If specified, print version number and exit.

Getting inline help is:

docker run --rm fnndsc/pl-img2dcm img2dcm --man

You need to specify input and output directories using the -v flag to docker run.

docker run --rm -u $(id -u)                             \
    -v $(pwd)/in:/incoming -v $(pwd)/out:/outgoing      \
    fnndsc/pl-img2dcm img2dcm                        \
    /incoming /outgoing

Build the Docker container:

docker build -t local/pl-img2dcm .

Run unit tests:

docker run --rm local/pl-img2dcm nosetests

Put some examples here!

https://raw.githubusercontent.com/FNNDSC/cookiecutter-chrisapp/master/doc/assets/badge/light.png