HLA_PheWAS

HLA PheWAS analysis code

Published manuscript: HLA-disease association and pleiotropy landscape in over 235 000 Finns

Hum Immunol. 2022 Feb 24:S0198-8859(22)00035-0. doi: 10.1016/j.humimm.2022.02.003.

code (./src)

Scripts for associations and plotting:

run_HLA_allele_assoc.R HLA allele association tests

allele_PheWAS.R Processing and plotting allele association results

functions.R Some helper functions