mean bootstrap support of trees in file

[bioinfowheat]

Hello,

I would like to filter a file of 1000 trees, such that any tree having mean boot strap support (mean across nodes) < threshold, would be removed. One way to do this is to just include mean bootstrap support per tree, in one of your summary commands of trees in a file. But I'm not sure what pxlstr includes. But it would be nice to filter directly, since densitree plotting is much better when one can remove low informative trees.

thanks,
C

[josephwb]

Do you have some example input and output?

pxcolt can collapse nodes, but you want to flag trees, yes?

[bioinfowheat]

yup, trees. just three tress, where the mean bootstrap values per tree vary (means = 80,75,50). I’d like to remove the tree if mean bootstrap of 50.

…

On Apr 28, 2021, at 1:22 PM, Joseph W. Brown ***@***.***> wrote: Do you have some example input and output? pxcolt can collapse nodes, but you want to flag trees, yes? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#150 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AGNJ7KVBNUEQG24ZJXE6KTTTK7VXNANCNFSM43WX2Z2A>.

[josephwb]

I understand, but could you please provide example input files?