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Fix for "C methylated in Unknown context..." in PE alignment and bismark2report alignment report processing #555

Merged

FelixKrueger merged 1 commit into FelixKrueger:master from alexcpan:master

Jan 5, 2023

Contributor

alexcpan commented Jan 2, 2023

bismark:

SE/PE alignment outputs differed via a capitalization

bismark2report:

regex didn't match either SE/PE alignment report output. (missing \(CN or CHN\))


          fix reporting for C methylated in Unknown context in PE alignment and…

c5451a2

… alignemtn report parsing in bismark2report

Owner

FelixKrueger commented Jan 5, 2023

Looks good, thanks for spotting.

FelixKrueger merged commit 1675a9c into FelixKrueger:master

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