Merge pull request #2422 from FirelyTeam/feature/2418-fhir-5.0.0

Implemented FHIR R5, version 5.0.0
FirelyTeam · Apr 11, 2023 · dd3cda1 · dd3cda1
2 parents 34b2774 + ef662db
commit dd3cda1
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Showing 254 changed files with 135,497 additions and 105,261 deletions.
diff --git a/build/DownloadFhirBuildProfile.ps1 b/build/DownloadFhirBuildProfile.ps1
@@ -4,6 +4,7 @@
 # cls
 
 # Script to be run from 'build' directory
+using namespace System.Collections.Generic
 
 param(
      [Parameter(Mandatory, HelpMessage="Enter the url 	from which the specification is to be downloaded")]
@@ -18,8 +19,9 @@ $baseDir = Resolve-Path ..
 $srcdir = "$baseDir\src";
 
 # These are all files from the spec that we need. Narratives are stripped after download
-$allFiles = @("conceptmaps.xml",
-                "extension-definitions.xml", 
+$allFiles = [List[string]]@(
+				"conceptmaps.xml",
+				"extension-definitions.xml", 
 				"namingsystem-registry.xml",
 				"profiles-others.xml", 
 				"profiles-resources.xml", 
@@ -29,6 +31,13 @@ $allFiles = @("conceptmaps.xml",
 				"fhir-all-xsd.zip"
 				);
 
+if ($fhirRelease -eq "R5")
+{
+	# remove extension-definitions.xml and namingsystem-registry.xml because from R5 those files do not exist anymore.
+	$allFiles.Remove("extension-definitions.xml"); #
+	$allFiles.Remove("namingsystem-registry.xml"); #
+}
+
 function New-TemporaryDirectory {
     $parent = [System.IO.Path]::GetTempPath()
     $name = [System.IO.Path]::GetRandomFileName()
@@ -38,7 +47,6 @@ function New-TemporaryDirectory {
 
 $tempDir = New-TemporaryDirectory
 
-
 # Download a file from a URL and place it at the specified target path.
 # This also has some basic capabilities to go through proxies without any additional configuration.
 function PowerCurl($targetPath, $sourceUrl)
@@ -296,6 +304,30 @@ function CorrectConceptmap($name)
 	$xml.Save($filename)
 }
 
+function ExtractPackageToDirectory($packageBaseUrl, $packageName, $packageVersion, $destDir)
+{
+	$packageUrl = $packageBaseUrl + $packageName + "/" + $packageVersion;
+
+	$destFile = Join-Path $tempDir $packageName
+	$destFile = $destFile + ".tgz";
+
+	$extractDir = Join-Path $tempDir $packageName
+
+	# Download extension package
+	PowerCurl $destFile $packageUrl
+
+	# Unpack extension package
+	New-Item -ItemType Directory $extractDir -Force | Out-Null
+	tar -xf $destFile -C $extractDir
+
+	# move part of the content to specification dir
+	New-Item -ItemType Directory $destDir -Force | Out-Null
+	$exclude = @('.index.json','package.json')
+	Copy-Item -Path $extractDir\Package\* -Filter "*.json" -Container:$false -Destination  $destDir  -Exclude $exclude 
+}
+
+# Start of processing:
+
 
 foreach($file in $allFiles)			
 {
@@ -339,22 +371,28 @@ foreach($file in $allFiles)
 			ChangeValueElementOfFhirType $file
 		}
 	}
-
 }
 
 $specificationDir = New-TemporaryDirectory
 
 Write-Host -ForegroundColor White "Copy files to project..."
 
 # Copy the files necessary for the specification library (specification.zip / data)
-CopySpecFile "conceptmaps.xml" $specificationDir
-CopySpecFile "extension-definitions.xml" $specificationDir
-CopySpecFile "namingsystem-registry.xml" $specificationDir
-CopySpecFile "profiles-others.xml" $specificationDir
-CopySpecFile "profiles-resources.xml" $specificationDir
-CopySpecFile "profiles-types.xml" $specificationDir
-CopySpecFile "search-parameters.xml" $specificationDir
-CopySpecFile "valuesets.xml" $specificationDir
+foreach($specFile in $allFiles)			
+{
+	if ($specFile.EndsWith(".xml")) 
+	{
+		Write-Host "Copy $specFile to $specificationDir"
+		CopySpecFile $specFile $specificationDir
+	}
+}
+
+if ($fhirRelease -eq "R5")
+{
+	# download package extensions and content to the specification.zip
+	$extensionDir = Join-Path $specificationDir "extensions"
+	ExtractPackageToDirectory -packageBaseUrl "http://packages2.fhir.org/packages/" -packageName "hl7.fhir.uv.extensions.r5" -packageVersion "1.0.0" -destDir $extensionDir;
+}
 
 # Add example files used for testing
 

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Attachment.cs b/src/Hl7.Fhir.Base/Model/Generated/Attachment.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Collections.Generic;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/BackboneElement.cs b/src/Hl7.Fhir.Base/Model/Generated/BackboneElement.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Collections.Generic;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/BackboneType.cs b/src/Hl7.Fhir.Base/Model/Generated/BackboneType.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Collections.Generic;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Base64Binary.cs b/src/Hl7.Fhir.Base/Model/Generated/Base64Binary.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;
@@ -55,8 +55,8 @@ public partial class Base64Binary : PrimitiveType, IValue<byte[]>
     /// </summary>
     public override string TypeName { get { return "base64Binary"; } }
 
-    /// Must conform to the pattern "\s*([A-Za-z0-9+\\/]{4})*(([A-Za-z0-9+\\/]{2}==)|([A-Za-z0-9+\\/]{3}=)|([A-Za-z0-9+\\/]{4}))\s*"
-    public const string PATTERN = @"\s*([A-Za-z0-9+\\/]{4})*(([A-Za-z0-9+\\/]{2}==)|([A-Za-z0-9+\\/]{3}=)|([A-Za-z0-9+\\/]{4}))\s*";
+    /// Must conform to the pattern "(?:[A-Za-z0-9+/]{4})*(?:[A-Za-z0-9+/]{2}==|[A-Za-z0-9+/]{3}=)?"
+    public const string PATTERN = @"(?:[A-Za-z0-9+/]{4})*(?:[A-Za-z0-9+/]{2}==|[A-Za-z0-9+/]{3}=)?";
 
     public Base64Binary(byte[] value)
     {

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Binary.cs b/src/Hl7.Fhir.Base/Model/Generated/Binary.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Collections.Generic;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Bundle.cs b/src/Hl7.Fhir.Base/Model/Generated/Bundle.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Collections.Generic;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Canonical.cs b/src/Hl7.Fhir.Base/Model/Generated/Canonical.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Code.cs b/src/Hl7.Fhir.Base/Model/Generated/Code.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/CodeableConcept.cs b/src/Hl7.Fhir.Base/Model/Generated/CodeableConcept.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Collections.Generic;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Coding.cs b/src/Hl7.Fhir.Base/Model/Generated/Coding.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Collections.Generic;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/ContactDetail.cs b/src/Hl7.Fhir.Base/Model/Generated/ContactDetail.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Collections.Generic;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/ContactPoint.cs b/src/Hl7.Fhir.Base/Model/Generated/ContactPoint.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Collections.Generic;
@@ -94,7 +94,7 @@ public enum ContactPointSystem
       [EnumLiteral("url", "http://hl7.org/fhir/contact-point-system"), Description("URL")]
       Url,
       /// <summary>
-      /// A contact that can be used for sending an sms message (e.g. mobile phones, some landlines).
+      /// A contact that can be used for sending a sms message (e.g. mobile phones, some landlines).
       /// (system: http://hl7.org/fhir/contact-point-system)
       /// </summary>
       [EnumLiteral("sms", "http://hl7.org/fhir/contact-point-system"), Description("SMS")]

diff --git a/src/Hl7.Fhir.Base/Model/Generated/DataType.cs b/src/Hl7.Fhir.Base/Model/Generated/DataType.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Collections.Generic;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Date.cs b/src/Hl7.Fhir.Base/Model/Generated/Date.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/DomainResource.cs b/src/Hl7.Fhir.Base/Model/Generated/DomainResource.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Collections.Generic;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/FhirBoolean.cs b/src/Hl7.Fhir.Base/Model/Generated/FhirBoolean.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/FhirDateTime.cs b/src/Hl7.Fhir.Base/Model/Generated/FhirDateTime.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;
@@ -55,8 +55,8 @@ public partial class FhirDateTime : PrimitiveType, IValue<string>
     /// </summary>
     public override string TypeName { get { return "dateTime"; } }
 
-    /// Must conform to the pattern "([0-9]([0-9]([0-9][1-9]|[1-9]0)|[1-9]00)|[1-9]000)(-(0[1-9]|1[0-2])(-(0[1-9]|[1-2][0-9]|3[0-1])(T([01][0-9]|2[0-3]):[0-5][0-9]:([0-5][0-9]|60)(\.[0-9]{1,9})?)?)?(Z|(\+|-)((0[0-9]|1[0-3]):[0-5][0-9]|14:00)))?"
-    public const string PATTERN = @"([0-9]([0-9]([0-9][1-9]|[1-9]0)|[1-9]00)|[1-9]000)(-(0[1-9]|1[0-2])(-(0[1-9]|[1-2][0-9]|3[0-1])(T([01][0-9]|2[0-3]):[0-5][0-9]:([0-5][0-9]|60)(\.[0-9]{1,9})?)?)?(Z|(\+|-)((0[0-9]|1[0-3]):[0-5][0-9]|14:00)))?";
+    /// Must conform to the pattern "([0-9]([0-9]([0-9][1-9]|[1-9]0)|[1-9]00)|[1-9]000)(-(0[1-9]|1[0-2])(-(0[1-9]|[1-2][0-9]|3[0-1])(T([01][0-9]|2[0-3]):[0-5][0-9]:([0-5][0-9]|60)(\.[0-9]{1,9})?)?)?(Z|(\+|-)((0[0-9]|1[0-3]):[0-5][0-9]|14:00)?)?)?"
+    public const string PATTERN = @"([0-9]([0-9]([0-9][1-9]|[1-9]0)|[1-9]00)|[1-9]000)(-(0[1-9]|1[0-2])(-(0[1-9]|[1-2][0-9]|3[0-1])(T([01][0-9]|2[0-3]):[0-5][0-9]:([0-5][0-9]|60)(\.[0-9]{1,9})?)?)?(Z|(\+|-)((0[0-9]|1[0-3]):[0-5][0-9]|14:00)?)?)?";
 
     public FhirDateTime(string value)
     {

diff --git a/src/Hl7.Fhir.Base/Model/Generated/FhirDecimal.cs b/src/Hl7.Fhir.Base/Model/Generated/FhirDecimal.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;
@@ -55,8 +55,8 @@ public partial class FhirDecimal : PrimitiveType, INullableValue<decimal>
     /// </summary>
     public override string TypeName { get { return "decimal"; } }
 
-    /// Must conform to the pattern "-?(0|[1-9][0-9]*)(\.[0-9]+)?([eE][+-]?[0-9]+)?"
-    public const string PATTERN = @"-?(0|[1-9][0-9]*)(\.[0-9]+)?([eE][+-]?[0-9]+)?";
+    /// Must conform to the pattern "-?(0|[1-9][0-9]{0,17})(\.[0-9]{1,17})?([eE][+-]?[0-9]{1,9}})?"
+    public const string PATTERN = @"-?(0|[1-9][0-9]{0,17})(\.[0-9]{1,17})?([eE][+-]?[0-9]{1,9}})?";
 
     public FhirDecimal(decimal? value)
     {

diff --git a/src/Hl7.Fhir.Base/Model/Generated/FhirString.cs b/src/Hl7.Fhir.Base/Model/Generated/FhirString.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;
@@ -55,8 +55,8 @@ public partial class FhirString : PrimitiveType, IValue<string>
     /// </summary>
     public override string TypeName { get { return "string"; } }
 
-    /// Must conform to the pattern "[ \r\n\t\S]+"
-    public const string PATTERN = @"[ \r\n\t\S]+";
+    /// Must conform to the pattern "^[\s\S]+$"
+    public const string PATTERN = @"^[\s\S]+$";
 
     public FhirString(string value)
     {

diff --git a/src/Hl7.Fhir.Base/Model/Generated/FhirUri.cs b/src/Hl7.Fhir.Base/Model/Generated/FhirUri.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/FhirUrl.cs b/src/Hl7.Fhir.Base/Model/Generated/FhirUrl.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Id.cs b/src/Hl7.Fhir.Base/Model/Generated/Id.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Identifier.cs b/src/Hl7.Fhir.Base/Model/Generated/Identifier.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Collections.Generic;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Instant.cs b/src/Hl7.Fhir.Base/Model/Generated/Instant.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Integer.cs b/src/Hl7.Fhir.Base/Model/Generated/Integer.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;
@@ -55,8 +55,8 @@ public partial class Integer : PrimitiveType, INullableValue<int>
     /// </summary>
     public override string TypeName { get { return "integer"; } }
 
-    /// Must conform to the pattern "-?([0]|([1-9][0-9]*))"
-    public const string PATTERN = @"-?([0]|([1-9][0-9]*))";
+    /// Must conform to the pattern "[0]|[-+]?[1-9][0-9]*"
+    public const string PATTERN = @"[0]|[-+]?[1-9][0-9]*";
 
     public Integer(int? value)
     {

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Integer64.cs b/src/Hl7.Fhir.Base/Model/Generated/Integer64.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;
@@ -55,8 +55,8 @@ public partial class Integer64 : PrimitiveType, INullableValue<long>
     /// </summary>
     public override string TypeName { get { return "integer64"; } }
 
-    /// Must conform to the pattern "-?([0]|([1-9][0-9]*))"
-    public const string PATTERN = @"-?([0]|([1-9][0-9]*))";
+    /// Must conform to the pattern "[0]|[-+]?[1-9][0-9]*"
+    public const string PATTERN = @"[0]|[-+]?[1-9][0-9]*";
 
     public Integer64(long? value)
     {

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Markdown.cs b/src/Hl7.Fhir.Base/Model/Generated/Markdown.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;
@@ -55,8 +55,8 @@ public partial class Markdown : PrimitiveType, IValue<string>
     /// </summary>
     public override string TypeName { get { return "markdown"; } }
 
-    /// Must conform to the pattern "\s*(\S|\s)*"
-    public const string PATTERN = @"\s*(\S|\s)*";
+    /// Must conform to the pattern "^[\s\S]+$"
+    public const string PATTERN = @"^[\s\S]+$";
 
     public Markdown(string value)
     {

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Meta.cs b/src/Hl7.Fhir.Base/Model/Generated/Meta.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Collections.Generic;

diff --git a/src/Hl7.Fhir.Base/Model/Generated/Oid.cs b/src/Hl7.Fhir.Base/Model/Generated/Oid.cs
@@ -1,5 +1,5 @@
 // <auto-generated/>
-// Contents of: hl7.fhir.r5.core version: 5.0.0-snapshot3
+// Contents of: hl7.fhir.r5.core version: 5.0.0
 
 using System;
 using System.Runtime.Serialization;