FoodOn v2024-06-17

Many minor improvements:

• fixing errant owl:deprecated true values.
• animal parts update
• harmonizing hen X ... -> chicken X ...; shelled -> "shell on"
• merging "avian" and "avian animal"
• Removing LanguaL import annotation since hasDbXref to LanguaL indicates source, and more annotations are being added on.
• shucked -> shell off
  ...

FoodOn v2024-04-07

Adjustment to include in food product hierarchy a number of animal materials.
Eliminating duplicate labels.

FoodOn v2024-03-26

Over 140 terms added to support PTFI (Periodic Table of Food Initiative) sample categories.

FoodOn v2024-02-21

Introducing the Animal template, located in /src/ontology/imports/animal/, which generates the animal_parts.ofn import file based on an animal_parts.tsv file of anatomical parts x taxa, in conjunction with a species_list.tsv file that specifies all animals (common names and taxa) to generate parts for, and a further id_mapping_table.tsv which keeps track of existing FoodOn ids minted for this template. The id_integer.txt file indicates starting range of id's to mint for new terms.

FoodOn v2024-02-03

This is an interim release, fixing a DL validation error. A release with animal parts template will come shortly.
This release also reduces the number of ChEBI annotations. Going forward for cross-references one can retrieve them directly from ChEBI.

FoodOn v2023-12-18

This release contains many updates, including a new more comprehensive beef, pork, buffalo, and bison cuts section as well as preparation for a generic animal parts and plant parts templates to be launched soon.

FoodOn v2023-06-30

This release contains numerous smaller edits, expansion of the plant taxa x anatomy robot table, adding namespace to various dbXrefs, and has been validated by Apache Jena riot validation tool to identify any errant RDF literals and URIs.

v0.5.1 release

• Deprecated some vitamin terms and replaced with CDNO hierarchy, CHEBI re-import.
• Removed use of NCIT Vitamin.
• Wine Biohackathon maceration terms, pomace, must, some preliminary appellation terms.
• Many curated FDA Seafood fish terms.

v0.5 release

This release includes a refactor and addition of many organismal material food items - i.e. plant anatomical part x taxonomy - which are detailed in first tab of https://docs.google.com/spreadsheets/d/1VJtz4m67tdUNDqRe3m1Okdxll64nTR46GSvCOmb0APE

FoodOn Beta v0.4.8 release

This release brings the replacement of over 1,600 foodon plant and animal species terms with their NCBITaxon equivalents, which now carry all the annotations that the foodon terms had. The separation previously existed because NCBITaxon entities were not thought to necessarily be references to whole organisms, but this attitude is now clear, thus removing the need for corresponding FoodOn entities. A next task will be to ensure as many remaining foodon plant and animal entities can be associated with NCBITaxon as possible; however NCBITaxon isn't a comprehensive taxonomy as it covers only sequenced organisms.