linktoBioImageAnalystForge

Standalone tools of broad interest: Icy (http://icy.bioimageanalysis.org/) TrackMate (https://github.com/fiji/TrackMate) MaMuT (https://github.com/fiji/MaMuT) Mastodon (https://github.com/mastodon-sc/mastodon) LocalZProjector (https://gitlab.pasteur.fr/iah-public/localzprojector) DeProj (https://gitlab.pasteur.fr/iah-public/DeProj) ec-CLEM (http://icy.bioimageanalysis.org/plugin/ec-clem/) source code https://github.com/anrcrocoval/ec-clem ec-clem autofinder http://icy.bioimageanalysis.org/plugin/ec-clem-autofinder/ source code https://github.com/anrcrocoval/autofinder/tree/master/src/main/java/plugins/building/autofinder OrthoViewerROI3D http://icy.bioimageanalysis.org/plugin/orthoviewerroi3d/ Automatic Registration http://icy.bioimageanalysis.org/protocol/automaticregistration/ SR-Tesseler (https://github.com/flevet/SR-Tesseler) Color-Tesseler (https://github.com/flevet/Coloc-Tesseler)
ZFBONE (https://github.com/MarcoTarasco/ZFBONE PDMandPearsonColocalization http://icy.bioimageanalysis.org/plugin/pdmandpearsoncolocalization/ SaveAsTifFast http://icy.bioimageanalysis.org/plugin/saveastiffast/ FlipSequence http://icy.bioimageanalysis.org/plugin/flipsequence/ SmartMerge http://icy.bioimageanalysis.org/plugin/smartmerge/ ENDIS https://github.com/PerrineGilloteaux/ENDIS CAROT https://github.com/PerrineGilloteaux/CAROT 2Dto3Ddeeplearning https://github.com/anrcrocoval/deeplearning GraphBasedPointcloudRegistration https://github.com/anrcrocoval/pointcloudregistration CorRecD https://github.com/PerrineGilloteaux/migrationChapter Metro https://github.com/PerrineGilloteaux/FBIWP1_IPDM/tree/master/metro CorrelativeView https://github.com/anrcrocoval/CorrelativeView QuantEv http://icy.bioimageanalysis.org/plugin/quantev/ C-CRAFT http://icy.bioimageanalysis.org/plugin/c-craft/ GcoPS http://icy.bioimageanalysis.org/plugin/gcops/ TubeSkinner http://icy.bioimageanalysis.org/plugin/tubeskinner/ AnisotropicDiffusion-ImgLib2 http://icy.bioimageanalysis.org/plugin/anisotropicdiffusion-imglib2/ Specific analysis tools developed for the users of the facility: Montpellier : https://github.com/MontpellierRessourcesImagerie Nantes : https://github.com/PerrineGilloteaux/microPICell Bordeaux https://github.com/fabricecordelieres https://github.com/flevet