A Knowledge graph representation of compounds and associated biological entities in the BY-COVID project.
Current status
- Number of Nodes: 35952
- Number of Edges: 279462
- Human Proteins: 1347
- Assay: 15835
- Chemical/Compound: 4096
- Mechanism of Action: 739
- Pathway: 1513
- Disease: 1585
- SideEffect: 7420
- Biological Process: 2085
- Molecular Function: 1332
Please check the BY_COVID_update_August.ipynb for understanding step wise process of KG generation and KG statistics. The KG has been exported to formats such as graphml, sif and so on for visualizations in other platforms. For example, the graphml file can be imported to Cytoscape directly. These files are located in 'data\export' folder.
The KG is also registered in EMBL-EBI's BioModels https://www.ebi.ac.uk/biomodels/MODEL2209020001).
We have created a separate git for Monkeypox KG. Please find it at: https://github.com/Fraunhofer-ITMP/mpox-kg
We have almost moved all Monkeypox related stuffs to its own git.The files you find here are just backups and will be removed soon.