Merge pull request #44 from FredHutch/annotReview_ki #177
cansavvyAnnotations
9 errors and 49 warnings
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macOS-latest (release)
No such keg: /opt/homebrew/Cellar/r
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macOS-latest (release)
Running examples in ‘gimap-Ex.R’ failed
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macOS-latest (release)
could not find function "hello"
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ubuntu-20.04 (release)
Running examples in ‘gimap-Ex.R’ failed
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ubuntu-20.04 (release)
could not find function "hello"
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ubuntu-20.04 (devel)
Running examples in ‘gimap-Ex.R’ failed
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ubuntu-20.04 (devel)
could not find function "hello"
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windows-latest (release)
Running examples in 'gimap-Ex.R' failed
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windows-latest (release)
could not find function "hello"
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macOS-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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macOS-latest (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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macOS-latest (release)
pkg-config 0.29.2_3 is already installed and up-to-date.
To reinstall 0.29.2_3, run:
brew reinstall pkg-config
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macOS-latest (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/RtmpiPq29o/Rbuild10fa3ec9459a/gimap/man/calc_gi.Rd:14: unknown macro '\item'
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macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/RtmpiPq29o/Rbuild10fa3ec9459a/gimap/man/calc_gi.Rd:16: unknown macro '\item'
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macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/RtmpiPq29o/Rbuild10fa3ec9459a/gimap/man/calc_gi.Rd:18: unknown macro '\item'
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macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/RtmpiPq29o/Rbuild10fa3ec9459a/gimap/man/calc_gi.Rd:20: unexpected section header '\description'
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macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/RtmpiPq29o/Rbuild10fa3ec9459a/gimap/man/calc_gi.Rd:23: unexpected section header '\examples'
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macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/RtmpiPq29o/Rbuild10fa3ec9459a/gimap/man/calc_gi.Rd:39: unexpected END_OF_INPUT '
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macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/RtmpiPq29o/Rbuild10fa3ec9459a/gimap/man/calc_lfc.Rd:12: unknown macro '\item'
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macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/RtmpiPq29o/Rbuild10fa3ec9459a/gimap/man/calc_lfc.Rd:14: unknown macro '\item'
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macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/RtmpiPq29o/Rbuild10fa3ec9459a/gimap/man/calc_lfc.Rd:16: unknown macro '\item'
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macOS-latest (release)
/private/var/folders/h9/l1shxhdd69nct08ylzq0n6q00000gn/T/RtmpiPq29o/Rbuild10fa3ec9459a/gimap/man/calc_lfc.Rd:18: unexpected section header '\description'
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ubuntu-20.04 (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ubuntu-20.04 (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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ubuntu-20.04 (release)
/tmp/RtmpPPah5t/Rbuild250e1f1c4fc1/gimap/man/calc_gi.Rd:14: unknown macro '\item'
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ubuntu-20.04 (release)
/tmp/RtmpPPah5t/Rbuild250e1f1c4fc1/gimap/man/calc_gi.Rd:16: unknown macro '\item'
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ubuntu-20.04 (release)
/tmp/RtmpPPah5t/Rbuild250e1f1c4fc1/gimap/man/calc_gi.Rd:18: unknown macro '\item'
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ubuntu-20.04 (release)
/tmp/RtmpPPah5t/Rbuild250e1f1c4fc1/gimap/man/calc_gi.Rd:20: unexpected section header '\description'
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ubuntu-20.04 (release)
/tmp/RtmpPPah5t/Rbuild250e1f1c4fc1/gimap/man/calc_gi.Rd:23: unexpected section header '\examples'
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ubuntu-20.04 (release)
/tmp/RtmpPPah5t/Rbuild250e1f1c4fc1/gimap/man/calc_gi.Rd:39: unexpected END_OF_INPUT '
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ubuntu-20.04 (release)
/tmp/RtmpPPah5t/Rbuild250e1f1c4fc1/gimap/man/calc_lfc.Rd:12: unknown macro '\item'
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ubuntu-20.04 (release)
/tmp/RtmpPPah5t/Rbuild250e1f1c4fc1/gimap/man/calc_lfc.Rd:14: unknown macro '\item'
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ubuntu-20.04 (release)
/tmp/RtmpPPah5t/Rbuild250e1f1c4fc1/gimap/man/calc_lfc.Rd:16: unknown macro '\item'
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ubuntu-20.04 (release)
/tmp/RtmpPPah5t/Rbuild250e1f1c4fc1/gimap/man/calc_lfc.Rd:18: unexpected section header '\description'
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ubuntu-20.04 (devel)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ubuntu-20.04 (devel)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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ubuntu-20.04 (devel)
/tmp/RtmpSxzZUF/Rbuild25103222eecf/gimap/man/calc_gi.Rd:14: unknown macro '\item'
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ubuntu-20.04 (devel)
/tmp/RtmpSxzZUF/Rbuild25103222eecf/gimap/man/calc_gi.Rd:16: unknown macro '\item'
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ubuntu-20.04 (devel)
/tmp/RtmpSxzZUF/Rbuild25103222eecf/gimap/man/calc_gi.Rd:18: unknown macro '\item'
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ubuntu-20.04 (devel)
/tmp/RtmpSxzZUF/Rbuild25103222eecf/gimap/man/calc_gi.Rd:20: unexpected section header '\description'
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ubuntu-20.04 (devel)
/tmp/RtmpSxzZUF/Rbuild25103222eecf/gimap/man/calc_gi.Rd:23: unexpected section header '\examples'
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ubuntu-20.04 (devel)
/tmp/RtmpSxzZUF/Rbuild25103222eecf/gimap/man/calc_gi.Rd:39: unexpected END_OF_INPUT '
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ubuntu-20.04 (devel)
/tmp/RtmpSxzZUF/Rbuild25103222eecf/gimap/man/calc_lfc.Rd:12: unknown macro '\item'
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ubuntu-20.04 (devel)
/tmp/RtmpSxzZUF/Rbuild25103222eecf/gimap/man/calc_lfc.Rd:14: unknown macro '\item'
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ubuntu-20.04 (devel)
/tmp/RtmpSxzZUF/Rbuild25103222eecf/gimap/man/calc_lfc.Rd:16: unknown macro '\item'
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ubuntu-20.04 (devel)
/tmp/RtmpSxzZUF/Rbuild25103222eecf/gimap/man/calc_lfc.Rd:18: unexpected section header '\description'
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windows-latest (release)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpIHw6SO/Rbuild8e83d302e5b/gimap/man/calc_gi.Rd:14: unknown macro '\item'
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windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpIHw6SO/Rbuild8e83d302e5b/gimap/man/calc_gi.Rd:16: unknown macro '\item'
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windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpIHw6SO/Rbuild8e83d302e5b/gimap/man/calc_gi.Rd:18: unknown macro '\item'
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windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpIHw6SO/Rbuild8e83d302e5b/gimap/man/calc_gi.Rd:20: unexpected section header '\description'
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windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpIHw6SO/Rbuild8e83d302e5b/gimap/man/calc_gi.Rd:23: unexpected section header '\examples'
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windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpIHw6SO/Rbuild8e83d302e5b/gimap/man/calc_gi.Rd:39: unexpected END_OF_INPUT '
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windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpIHw6SO/Rbuild8e83d302e5b/gimap/man/calc_lfc.Rd:12: unknown macro '\item'
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windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpIHw6SO/Rbuild8e83d302e5b/gimap/man/calc_lfc.Rd:14: unknown macro '\item'
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windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpIHw6SO/Rbuild8e83d302e5b/gimap/man/calc_lfc.Rd:16: unknown macro '\item'
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windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpIHw6SO/Rbuild8e83d302e5b/gimap/man/calc_lfc.Rd:18: unexpected section header '\description'
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