biology/py-pywgsim: Modified wgsim genomic data simulator

pywgsim is a modified version of the wgsim short read simulator. The code for wgsim has been modified to allow visualizing the simulated mutations as a GFF file.
freebsd · Sep 6, 2021 · c085af1 · c085af1
1 parent cb2492b
commit c085af1
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diff --git a/biology/Makefile b/biology/Makefile
@@ -156,6 +156,7 @@
     SUBDIR += py-pyfaidx
     SUBDIR += py-pysam
     SUBDIR += py-python-libsbml
+    SUBDIR += py-pywgsim
     SUBDIR += py-resdk
     SUBDIR += py-scikit-bio
     SUBDIR += py-xenaPython

diff --git a/biology/py-pywgsim/Makefile b/biology/py-pywgsim/Makefile
@@ -0,0 +1,17 @@
+PORTNAME=	pywgsim
+DISTVERSION=	0.5.2
+CATEGORIES=	biology python
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	jwb@FreeBSD.org
+COMMENT=	Modified wgsim genomic data simulator
+
+LICENSE=	MIT
+
+RUN_DEPENDS=	${PYTHON_PKGNAMEPREFIX}plac>=0:devel/py-plac@${PY_FLAVOR}
+
+USES=		python
+USE_PYTHON=	autoplist distutils
+
+.include <bsd.port.mk>
diff --git a/biology/py-pywgsim/distinfo b/biology/py-pywgsim/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1630888272
+SHA256 (pywgsim-0.5.2.tar.gz) = b6726be21629bd1cda12592b536dcd62d250fc4872e47cbcc54066e8a6e8f709
+SIZE (pywgsim-0.5.2.tar.gz) = 81724
diff --git a/biology/py-pywgsim/pkg-descr b/biology/py-pywgsim/pkg-descr
@@ -0,0 +1,5 @@
+pywgsim is a modified version of the wgsim short read simulator.  The
+code for wgsim has been modified to allow visualizing the simulated
+mutations as a GFF file.
+
+WWW: https://pypi.python.org/pypi/pywgsim