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@FrietzeLabUVM

Frietze Lab @ UVM

Bioinformatics software, scripts, and analysis projects developed by the Frietze Lab

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  1. ssvQC ssvQC Public

    R package for QC of enrichment based NGS assays. ChIP-seq, cut&run, ATAC-seq, etc.

    R 5

  2. peaksat peaksat Public

    R package to do peak saturation analysis for ChIP-seq.

    R 1 1

Repositories

Showing 10 of 18 repositories
  • chiptsne2 Public

    General ChIPseq and epigenetic-seq workflow R package with support for t-SNE and UMAP to discover combinatorial epigenetic patterns.

    FrietzeLabUVM/chiptsne2’s past year of commit activity
    R 0 0 0 0 Updated Jul 22, 2024
  • ssvQC Public

    R package for QC of enrichment based NGS assays. ChIP-seq, cut&run, ATAC-seq, etc.

    FrietzeLabUVM/ssvQC’s past year of commit activity
    R 5 0 5 0 Updated Mar 22, 2024
  • TAPhelpR Public

    R package to help with TAP pipeline outputs

    FrietzeLabUVM/TAPhelpR’s past year of commit activity
    R 0 0 0 0 Updated Mar 14, 2024
  • TAP Public

    Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.

    FrietzeLabUVM/TAP’s past year of commit activity
    Shell 1 Apache-2.0 0 1 0 Updated Mar 14, 2024
  • peaksat Public

    R package to do peak saturation analysis for ChIP-seq.

    FrietzeLabUVM/peaksat’s past year of commit activity
    R 1 1 0 0 Updated Oct 16, 2023
  • chiptsne Public

    Apply tSNE for analysis of ChIPseq and related dataset

    FrietzeLabUVM/chiptsne’s past year of commit activity
    R 0 MIT 0 0 0 Updated Apr 21, 2023
  • EIDA_core_resources Public

    Scripts and other computational resources for the EIDA core

    FrietzeLabUVM/EIDA_core_resources’s past year of commit activity
    0 MIT 0 0 0 Updated Jun 27, 2022
  • BRD_PPIN Public
    FrietzeLabUVM/BRD_PPIN’s past year of commit activity
    R 1 MIT 0 0 0 Updated Nov 29, 2021
  • easyGO Public

    Make it easier to with GO terms in R.

    FrietzeLabUVM/easyGO’s past year of commit activity
    R 0 0 0 0 Updated Nov 9, 2021
  • ATACseq Public Forked from tobiasrausch/ATACseq

    Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

    FrietzeLabUVM/ATACseq’s past year of commit activity
    Shell 0 GPL-3.0 36 0 0 Updated Sep 14, 2021
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