TAPhelpR is a companion R packge for the TAP pipeline.

Installation

if(!require("devtools")){
  install.packages("devtools")
}
# This optional dependency has fallen out of Bioconductor and must be installed manually. 
# It is only required to download data from ENCODE.
devtools::install_github("CharlesJB/ENCODExplorer")
devtools::install_github("FrietzeLabUVM/TAPhelpR")

Docs

For documentation specific to TAPhelpR see this vignette and ?function help within R.

See here for a complete workflow use case.