a1_extract-reef-aca.jsExport Allen Coral Atlas coral reef distribution data as .shp at a 500 m resolution from Google Earth Engine (GEE)a2_clean-reefs.RAdd GCRMN region to coral reef distribution and create 100 km coral reef buffer
data_descriptors.RGet number of sites, surveys, datasets, first and last year of monitoring.graphical_par.RGraphical parameters, including colors and fonts.theme_graph.RMain ggplot theme for the plots of the reports.theme_map.RMain ggplot theme for the maps of the reports.
─ Session info ───────────────────────────────────────────────────────────────
setting value
version R version 4.4.0 (2024-04-24 ucrt)
os Windows 10 x64 (build 18363)
system x86_64, mingw32
ui RTerm
language (EN)
collate French_France.utf8
ctype French_France.utf8
tz Europe/Paris
date 2024-06-07
pandoc 3.1.11 @ C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)
─ Packages ───────────────────────────────────────────────────────────────────
package * version date (UTC) lib source
askpass 1.2.0 2023-09-03 [1] CRAN (R 4.4.0)
backports 1.5.0 2024-05-23 [1] CRAN (R 4.4.0)
base64enc 0.1-3 2015-07-28 [1] CRAN (R 4.4.0)
bit 4.0.5 2022-11-15 [1] CRAN (R 4.4.0)
bit64 4.0.5 2020-08-30 [1] CRAN (R 4.4.0)
blob 1.2.4 2023-03-17 [1] CRAN (R 4.4.0)
broom 1.0.6 2024-05-17 [1] CRAN (R 4.4.0)
bslib 0.7.0 2024-03-29 [1] CRAN (R 4.4.0)
cachem 1.1.0 2024-05-16 [1] CRAN (R 4.4.0)
callr 3.7.6 2024-03-25 [1] CRAN (R 4.4.0)
cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.4.0)
class 7.3-22 2023-05-03 [1] CRAN (R 4.4.0)
classInt 0.4-10 2023-09-05 [1] CRAN (R 4.4.0)
cli 3.6.2 2023-12-11 [1] CRAN (R 4.4.0)
clipr 0.8.0 2022-02-22 [1] CRAN (R 4.4.0)
clock 0.7.0 2023-05-15 [1] CRAN (R 4.4.0)
codetools 0.2-20 2024-03-31 [1] CRAN (R 4.4.0)
colorspace 2.1-0 2023-01-23 [1] CRAN (R 4.4.0)
conflicted 1.2.0 2023-02-01 [1] CRAN (R 4.4.0)
cpp11 0.4.7 2023-12-02 [1] CRAN (R 4.4.0)
crayon 1.5.2 2022-09-29 [1] CRAN (R 4.4.0)
curl 5.2.1 2024-03-01 [1] CRAN (R 4.4.0)
data.table 1.15.4 2024-03-30 [1] CRAN (R 4.4.0)
DBI 1.2.3 2024-06-02 [1] CRAN (R 4.4.0)
dbplyr 2.5.0 2024-03-19 [1] CRAN (R 4.4.0)
diagram 1.6.5 2020-09-30 [1] CRAN (R 4.4.0)
dials 1.2.1 2024-02-22 [1] CRAN (R 4.4.0)
DiceDesign 1.10 2023-12-07 [1] CRAN (R 4.4.0)
digest 0.6.35 2024-03-11 [1] CRAN (R 4.4.0)
doFuture 1.0.1 2023-12-20 [1] CRAN (R 4.4.0)
dplyr 1.1.4 2023-11-17 [1] CRAN (R 4.4.0)
dtplyr 1.3.1 2023-03-22 [1] CRAN (R 4.4.0)
e1071 1.7-14 2023-12-06 [1] CRAN (R 4.4.0)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.4.0)
evaluate 0.23 2023-11-01 [1] CRAN (R 4.4.0)
fansi 1.0.6 2023-12-08 [1] CRAN (R 4.4.0)
farver 2.1.2 2024-05-13 [1] CRAN (R 4.4.0)
fastmap 1.2.0 2024-05-15 [1] CRAN (R 4.4.0)
fontawesome 0.5.2 2023-08-19 [1] CRAN (R 4.4.0)
forcats 1.0.0 2023-01-29 [1] CRAN (R 4.4.0)
foreach 1.5.2 2022-02-02 [1] CRAN (R 4.4.0)
fs 1.6.4 2024-04-25 [1] CRAN (R 4.4.0)
furrr 0.3.1 2022-08-15 [1] CRAN (R 4.4.0)
future 1.33.2 2024-03-26 [1] CRAN (R 4.4.0)
future.apply 1.11.2 2024-03-28 [1] CRAN (R 4.4.0)
gargle 1.5.2 2023-07-20 [1] CRAN (R 4.4.0)
generics 0.1.3 2022-07-05 [1] CRAN (R 4.4.0)
ggplot2 3.5.1 2024-04-23 [1] CRAN (R 4.4.0)
globals 0.16.3 2024-03-08 [1] CRAN (R 4.4.0)
glue 1.7.0 2024-01-09 [1] CRAN (R 4.4.0)
googledrive 2.1.1 2023-06-11 [1] CRAN (R 4.4.0)
googlesheets4 1.1.1 2023-06-11 [1] CRAN (R 4.4.0)
gower 1.0.1 2022-12-22 [1] CRAN (R 4.4.0)
GPfit 1.0-8 2019-02-08 [1] CRAN (R 4.4.0)
gtable 0.3.5 2024-04-22 [1] CRAN (R 4.4.0)
hardhat 1.4.0 2024-06-02 [1] CRAN (R 4.4.0)
haven 2.5.4 2023-11-30 [1] CRAN (R 4.4.0)
highr 0.11 2024-05-26 [1] CRAN (R 4.4.0)
hms 1.1.3 2023-03-21 [1] CRAN (R 4.4.0)
htmltools 0.5.8.1 2024-04-04 [1] CRAN (R 4.4.0)
httr 1.4.7 2023-08-15 [1] CRAN (R 4.4.0)
ids 1.0.1 2017-05-31 [1] CRAN (R 4.4.0)
infer 1.0.7 2024-03-25 [1] CRAN (R 4.4.0)
ipred 0.9-14 2023-03-09 [1] CRAN (R 4.4.0)
isoband 0.2.7 2022-12-20 [1] CRAN (R 4.4.0)
iterators 1.0.14 2022-02-05 [1] CRAN (R 4.4.0)
jquerylib 0.1.4 2021-04-26 [1] CRAN (R 4.4.0)
jsonlite 1.8.8 2023-12-04 [1] CRAN (R 4.4.0)
KernSmooth 2.23-22 2023-07-10 [1] CRAN (R 4.4.0)
knitr 1.47 2024-05-29 [1] CRAN (R 4.4.0)
labeling 0.4.3 2023-08-29 [1] CRAN (R 4.4.0)
lattice 0.22-6 2024-03-20 [1] CRAN (R 4.4.0)
lava 1.8.0 2024-03-05 [1] CRAN (R 4.4.0)
lhs 1.1.6 2022-12-17 [1] CRAN (R 4.4.0)
lifecycle 1.0.4 2023-11-07 [1] CRAN (R 4.4.0)
listenv 0.9.1 2024-01-29 [1] CRAN (R 4.4.0)
lubridate 1.9.3 2023-09-27 [1] CRAN (R 4.4.0)
magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.4.0)
MASS 7.3-60.2 2024-04-24 [1] local
Matrix 1.7-0 2024-03-22 [1] CRAN (R 4.4.0)
memoise 2.0.1 2021-11-26 [1] CRAN (R 4.4.0)
mgcv 1.9-1 2023-12-21 [1] CRAN (R 4.4.0)
mime 0.12 2021-09-28 [1] CRAN (R 4.4.0)
modeldata 1.3.0 2024-01-21 [1] CRAN (R 4.4.0)
modelenv 0.1.1 2023-03-08 [1] CRAN (R 4.4.0)
modelr 0.1.11 2023-03-22 [1] CRAN (R 4.4.0)
munsell 0.5.1 2024-04-01 [1] CRAN (R 4.4.0)
nlme 3.1-164 2023-11-27 [1] CRAN (R 4.4.0)
nnet 7.3-19 2023-05-03 [1] CRAN (R 4.4.0)
numDeriv 2016.8-1.1 2019-06-06 [1] CRAN (R 4.4.0)
openssl 2.2.0 2024-05-16 [1] CRAN (R 4.4.0)
parallelly 1.37.1 2024-02-29 [1] CRAN (R 4.4.0)
parsnip 1.2.1 2024-03-22 [1] CRAN (R 4.4.0)
patchwork 1.2.0 2024-01-08 [1] CRAN (R 4.4.0)
pillar 1.9.0 2023-03-22 [1] CRAN (R 4.4.0)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.4.0)
prettyunits 1.2.0 2023-09-24 [1] CRAN (R 4.4.0)
processx 3.8.4 2024-03-16 [1] CRAN (R 4.4.0)
prodlim 2023.08.28 2023-08-28 [1] CRAN (R 4.4.0)
progress 1.2.3 2023-12-06 [1] CRAN (R 4.4.0)
progressr 0.14.0 2023-08-10 [1] CRAN (R 4.4.0)
proxy 0.4-27 2022-06-09 [1] CRAN (R 4.4.0)
ps 1.7.6 2024-01-18 [1] CRAN (R 4.4.0)
purrr 1.0.2 2023-08-10 [1] CRAN (R 4.4.0)
R6 2.5.1 2021-08-19 [1] CRAN (R 4.4.0)
ragg 1.3.2 2024-05-15 [1] CRAN (R 4.4.0)
rappdirs 0.3.3 2021-01-31 [1] CRAN (R 4.4.0)
RColorBrewer 1.1-3 2022-04-03 [1] CRAN (R 4.4.0)
Rcpp 1.0.12 2024-01-09 [1] CRAN (R 4.4.0)
readr 2.1.5 2024-01-10 [1] CRAN (R 4.4.0)
readxl 1.4.3 2023-07-06 [1] CRAN (R 4.4.0)
recipes 1.0.10 2024-02-18 [1] CRAN (R 4.4.0)
rematch 2.0.0 2023-08-30 [1] CRAN (R 4.4.0)
rematch2 2.1.2 2020-05-01 [1] CRAN (R 4.4.0)
reprex 2.1.0 2024-01-11 [1] CRAN (R 4.4.0)
rlang 1.1.3 2024-01-10 [1] CRAN (R 4.4.0)
rmarkdown 2.27 2024-05-17 [1] CRAN (R 4.4.0)
rpart 4.1.23 2023-12-05 [1] CRAN (R 4.4.0)
rsample 1.2.1 2024-03-25 [1] CRAN (R 4.4.0)
rstudioapi 0.16.0 2024-03-24 [1] CRAN (R 4.4.0)
rvest 1.0.4 2024-02-12 [1] CRAN (R 4.4.0)
s2 1.1.6 2023-12-19 [1] CRAN (R 4.4.0)
sass 0.4.9 2024-03-15 [1] CRAN (R 4.4.0)
scales 1.3.0 2023-11-28 [1] CRAN (R 4.4.0)
selectr 0.4-2 2019-11-20 [1] CRAN (R 4.4.0)
sf 1.0-16 2024-03-24 [1] CRAN (R 4.4.0)
shape 1.4.6.1 2024-02-23 [1] CRAN (R 4.4.0)
slider 0.3.1 2023-10-12 [1] CRAN (R 4.4.0)
SQUAREM 2021.1 2021-01-13 [1] CRAN (R 4.4.0)
stringi 1.8.3 2023-12-11 [1] CRAN (R 4.4.0)
stringr 1.5.1 2023-11-14 [1] CRAN (R 4.4.0)
survival 3.5-8 2024-02-14 [1] CRAN (R 4.4.0)
sys 3.4.2 2023-05-23 [1] CRAN (R 4.4.0)
systemfonts 1.1.0 2024-05-15 [1] CRAN (R 4.4.0)
textshaping 0.4.0 2024-05-24 [1] CRAN (R 4.4.0)
tibble 3.2.1 2023-03-20 [1] CRAN (R 4.4.0)
tidymodels 1.2.0 2024-03-25 [1] CRAN (R 4.4.0)
tidyr 1.3.1 2024-01-24 [1] CRAN (R 4.4.0)
tidyselect 1.2.1 2024-03-11 [1] CRAN (R 4.4.0)
tidyverse 2.0.0 2023-02-22 [1] CRAN (R 4.4.0)
timechange 0.3.0 2024-01-18 [1] CRAN (R 4.4.0)
timeDate 4032.109 2023-12-14 [1] CRAN (R 4.4.0)
tinytex 0.51 2024-05-06 [1] CRAN (R 4.4.0)
tune 1.2.1 2024-04-18 [1] CRAN (R 4.4.0)
tzdb 0.4.0 2023-05-12 [1] CRAN (R 4.4.0)
units 0.8-5 2023-11-28 [1] CRAN (R 4.4.0)
utf8 1.2.4 2023-10-22 [1] CRAN (R 4.4.0)
uuid 1.2-0 2024-01-14 [1] CRAN (R 4.4.0)
vctrs 0.6.5 2023-12-01 [1] CRAN (R 4.4.0)
viridisLite 0.4.2 2023-05-02 [1] CRAN (R 4.4.0)
vroom 1.6.5 2023-12-05 [1] CRAN (R 4.4.0)
warp 0.2.1 2023-11-02 [1] CRAN (R 4.4.0)
withr 3.0.0 2024-01-16 [1] CRAN (R 4.4.0)
wk 0.9.1 2023-11-29 [1] CRAN (R 4.4.0)
workflows 1.1.4 2024-02-19 [1] CRAN (R 4.4.0)
workflowsets 1.1.0 2024-03-21 [1] CRAN (R 4.4.0)
xfun 0.44 2024-05-15 [1] CRAN (R 4.4.0)
xml2 1.3.6 2023-12-04 [1] CRAN (R 4.4.0)
yaml 2.3.8 2023-12-11 [1] CRAN (R 4.4.0)
yardstick 1.3.1 2024-03-21 [1] CRAN (R 4.4.0)
[1] C:/Users/jwicquart/AppData/Local/Programs/R/R-4.4.0/library
──────────────────────────────────────────────────────────────────────────────