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genieBPC 1.1.1
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@jalavery jalavery released this 29 Mar 17:54
v1.1.1
9501173

  • Updated code for default institution in create_analytic_cohort() to fix bug if the cohort = "Prostate" (#130)

  • Add 'cohort' parameter to synapse_version() to enable the user to subset by cohort(s) of interest

  • Updated genieBPC::nsclc_test_data to ensure unique sample ids for CNA file.

  • Updated genieBPC::nsclc_test_data to randomly sample from cancer diagnosis dataset, stratified by stage, and incorporate genomic data into dataset.

  • Updated README and 'Pull Data Synapse Vignette' to clarify instructions for registering for a 'Synapse' account (#100, #105)

  • Add publications (#96, #110)

  • Add information about genomic differences between genomic data downloaded from cBioPortal versus Synapse (#92)

  • Update tests to test across all data releases (#56)

  • Fix bug related to radiation therapy data not being returned in create_analytic_cohort()

Data Release Updates

  • Added BLADDER v1.2-consortium release

  • Added NSCLC 2.3-consortium release

  • Added CRC v1.3-consortium release

  • Removed NSCLC 2.1-consortium release - Due to the inadvertent inclusion of data indicative of ages over 89 for data associated with the Project GENIE BioPharma Collaborative, this release was replaced with the NSCLC 2.3-consortium release.

  • Removed CRC v1.1-consortium release - Due to the inadvertent inclusion of data indicative of ages over 89 for data associated with the Project GENIE BioPharma Collaborative, this release was replaced with the newly added CRC v1.3-consortium release.

  • Removed CRC v1.2-consortium release - Due to the inadvertent inclusion of data indicative of ages over 89 for data associated with the Project GENIE BioPharma Collaborative, this release was replaced with the newly added CRC v1.3-consortium release.

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