…beta.2) (#133)

--------------- science functionality changes ---------------------------

* Added assimilation for cubed-sphere grid.

* Added reading forcing from matching cubed-sphere grid when running on cubed-sphere tiles.
  
* Added functionality for output of Catchment prognostics increments via HISTORY.  Removed legacy code from LDASsa for output of increments.

* Added FP-5.25 transition (30 Jan 2020) to "cross-stream" dates.

* Functionality to create regional (non-global) nc4 vegdyn restart file.

* Additional functionality for CATCHMENT_OFFLINE to add extra variables into catch restart files (as needed by GCM).

* Permitted processing of (assimilation) observations for innovations output *without* perturbations turned on.

------------- infrastructure changes ---------------------------------

* Added functionality for SLES 12 support in addition to SLES11 (ESMA_env v2.0.2).

* Updated to MAPL v2.0.

* Removed dycore and FMS

* Conforms to GNU compiler (gcc-9.1).

* Initial clean up of GEOSldas_HIST.rc.

* Added post-processing to compress (gzip) landpert restart files (except final time).

* Added LDAS_app/mk_GEOSldasRestarts.F90.    Adapted from GCM GridComp's mk_LDASsaRestarts.F90 in preparation for re-tiling changes.

* Fixed output log file name and location.

---------------- bug fixes and other minor changes -------------------------------------

* Bug fix in select-update_type 9 (abs(deltaT)>0.)

* Bug fix for local mwRTM and time dimension restart.

* Replaced copy ("cp") with link ("ln") for catparam and mwrtm diagnostic output files.

---------------------------------------------------------------------------------------------------

Pointing to tags of GCM_GridComp and GMAO_Shared

…0200318) (#156)

bug fix:  wrong indent in python script (ldas_setup)

Updated README.md

New GEOS_SurfaceGridComp.rc file
Cross-stream support for FP f525_p5 forcing
Updated README.md
Parallel post-processing
Zero-diff for Catchment
Non-zero diff for CatchCN (via v1.8.3 of GEOS_GCMGridComp)
Bug fixes:
- obspertrseed restart file name when restarting from existing run
- subdaily2daily nc4 concatenation (indent error)

* fix gnu debug (#178)

* checkpoint files are geneareted by GEOSldas  (#182)

* checkpoint files are generated by GEOSldas ( not MAPL) when on cubed-sphere tile space

* create year/month directories for ldas_ObsFcstAna from within GEOSldas executable

* change system() calls to Fortran2008 standard Execute_command_line()

* subdaily2daily concatenation;  SLES12 sbatch fix

- Added sbatch submission for pre-processing of restarts to comply with SLES12 requirements.
- Subdaily-to-daily nc4 file concatenation now processes before the month is complete.

* pass in optional account through ldas_setup (#184)

* updating to MAPL 2.1.1 (updated ESMA_env and cmake)

* Resurrecting SMAP L1C Tb fore-minus-aft check

so we can merge develop into this feature branch

added during resolving of conflict

Science: 
* Resurrected SMAP L1C Tb fore-minus-aft check.

Infrastructure:
* Updated utilities to MAPL v2.1.1, ESMA_env v2.1.1., ESMA_cmake v3.0.1
* Parallel post-processing
* “sbatch” submission for pre-processing of restarts to comply with SLES12 requirements. 
* Subdaily-to-daily concatenation processes before month is complete.
* Temporary solution to create directories for ObsFcstAna files to enable extending an existing GEOSldas run without going through setup.

Documentation:
* Updated README.md

Bug fixes:
* “obspertrseed” restart file name when restarting from existing run
* Subdaily-to-daily nc4 concatenation (indent error)
* Fixes for GNU compiler in debug mode 
* Fixed “landpert” checkpoint output when on cube-sphere tiles

no changes to merge, just syncing

- works on SLES11 with Intel-18 and on SLES12 with Intel-19
- NOT zero-diff across operating systems