removed unused

GMOD · Mar 26, 2019 · 1277d50 · 1277d50
1 parent b113b9a
commit 1277d50
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diff --git a/client/apollo/js/View/Track/AnnotTrack.js b/client/apollo/js/View/Track/AnnotTrack.js
@@ -1769,29 +1769,6 @@ define([
                 track.changed();
             },
 
-            hideVariantEffect: function() {
-                var track = this;
-                var trackName = this.getUniqueTrackName();
-                var selected = this.selectionManager.getSelection();
-                // this.selectionManager.clearSelection();
-                // var transcriptUniqueName;
-                // if (selected[0].feature.parent()) {
-                //     //selected is an exon, get its parent
-                //     var parent = selected[0].feature.parent();
-                //     transcriptUniqueName = parent.afeature.uniquename;
-                // }
-                // else {
-                //     transcriptUniqueName = selected[0].feature.afeature.uniquename;
-                // }
-                //
-                // var postData = {
-                //     track: trackName,
-                //     features: [{ uniquename: transcriptUniqueName }],
-                //     operation: 'dissociate_transcript_from_gene'
-                // };
-                // track.executeUpdateOperation(JSON.stringify(postData));
-            },
-
             mergeAnnotations: function (selection) {
                 var track = this;
                 var annots = [];
@@ -6951,15 +6928,6 @@ define([
                     });
                     annot_context_menu.addChild(viewVariantEffect);
                     contextMenuItems["view_variant_effect"] = index++;
-                    // //
-                    // var hideVariantEffect = new dijit.MenuItem({
-                    //     label: "Hide Variant Effect",
-                    //     onClick: function () {
-                    //         thisB.hideVariantEffect();
-                    //     }
-                    // });
-                    // annot_context_menu.addChild(hideVariantEffect);
-                    // contextMenuItems["hide_variant_effect"] = index++;
 
                     annot_context_menu.addChild(new dijit.MenuSeparator());
                     index++;

diff --git a/grails-app/services/org/bbop/apollo/RequestHandlingService.groovy b/grails-app/services/org/bbop/apollo/RequestHandlingService.groovy
@@ -1324,7 +1324,6 @@ class RequestHandlingService {
             // TODO: If so, then we should change all of our integration tests for sequence alterations to have comments
             if (jsonFeature.has(FeatureStringEnum.NON_RESERVED_PROPERTIES.value)) {
                 JSONArray properties = jsonFeature.getJSONArray(FeatureStringEnum.NON_RESERVED_PROPERTIES.value);
-                println "adding properties ${properties as JSON}"
                 for (int j = 0; j < properties.length(); ++j) {
                     JSONObject property = properties.getJSONObject(j)
                     String tag = property.getString(FeatureStringEnum.TAG.value)
@@ -1334,7 +1333,6 @@ class RequestHandlingService {
                             value: value,
                             tag: tag
                     ).save()
-                    println "adding property ${tag} ${value}"
                     featurePropertyService.addProperty(sequenceAlteration, featureProperty)
                     sequenceAlteration.save(flush: true)
                 }