Merge dbeb07a into cfd84d7

client/apollo/css/get_history.css

@@ -1,68 +1,68 @@
 @CHARSET "UTF-8";
 
-.jbrowse .history_div {
+.history_div {
 	font-size: 9px;
 }
 
-.jbrowse .history_table {
+.history_table {
 	font-size: 1.5em;
 /*	max-width: 47em; */
 }
 
-.jbrowse .history_header_column {
+.history_header_column {
 	font-weight: bold;
 	text-decoration: underline;
 }
-.jbrowse .history_set{
+.history_set{
 	text-align: left;
 	margin-right: auto;
 }
 
-.jbrowse .history_column_operation {
+.history_column_operation {
 	width: 17em !important;
 }
 
-.jbrowse .history_column_action{
+.history_column_action{
 	width: 5em !important;
 }
 
-.jbrowse .history_column {
+.history_column {
 	width: 15em;
 	display: inline-block;
 	background-color: inherit;
 }
 
-.jbrowse .history_row_selected  {
+.history_row_selected  {
 	background-color: #4169e1;
 	color: white;
 }
 
-.jbrowse .history_row:hover  {
+.history_row:hover  {
 	background-color: #000099;
 	color: white;
 }
 
-.jbrowse .history_row_current {
+.history_row_current {
 	background-color: #787878;
 	color: white;
 }
 
-.jbrowse .history_rows {
+.history_rows {
 	max-height: 10em;
 	overflow-y: auto;
 }
 
-.jbrowse .history_column_date {
+.history_column_date {
 	max-width: 10em;
 }
 
-.jbrowse .history_preview {
+.history_preview {
 	width: 45em;
 	height: 2em;
 	padding-top: 3em;
 }
 
-.jbrowse .revert_button.dijitButton .dijitButtonNode {
+.revert_button.dijitButton .dijitButtonNode {
 	padding: 0px;
 	margin: 0px;
 }

client/apollo/css/get_sequence.css

@@ -1,35 +1,35 @@
 @CHARSET "UTF-8";
 
-.jbrowse .get_sequence {
+.get_sequence {
 	font-size:10px;
 }
 
-.jbrowse .gff3_area{
+.gff3_area{
 	width: 50em;
 	height: 20em;
 	font-family: 'courier';
 	font-size: 1.0em;
 }
 
-.jbrowse .sequence_area {
+.sequence_area {
 	width: 60em;
 	height: 20em;
 	font-family: 'courier';
 	font-size: 1.5em;
 }
 
-.jbrowse .first_button_div {
+.first_button_div {
 	margin-top: 10px;
 }
 
-.jbrowse .button_div {
+.button_div {
 	margin-top: 5px;
 }
 
-.jbrowse .button_label {
+.button_label {
 	margin-left: 3px;
 }
 
-.jbrowse .button_field {
+.button_field {
 	margin-left: 3px;
 }

docs/Apollo2Build.md

@@ -81,9 +81,10 @@ Updating the web-service doc can be done with `./apollo create-rest-doc`
 
 #### Running the code for the making client plugin changes
 
-After starting the server run `./apollo watchman` which should automatically copy any files that have been modified from the [client directory](../client) to the running instance.
+After starting the server you can run `./gradlew installJBrowseWebOnly` to update the client code to update the JS code. 
+
+If for some reason this is not working then make sure that your network development tab, in your browser console, has disabled caching.  You can also run the command `./gradlew copy-resources-dev` manually each time instead if the files don't seem to be getting copied.
 
-If for some reason this is not working then make sure that your network development tab, in your browser console, has disabled caching.  You can also run the command `gradle copy-resources-dev` manually each time instead if the files don't seem to be getting copied.
 
 #### Running the code for GWT changes