Merge pull request #2512 from MoffMade/fix-2511

add returnAllOrganisms to updateOrganismWithInfo
GMOD · Sep 2, 2020 · baa5ab7 · baa5ab7
2 parents f27376b + 545363f
commit baa5ab7
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/grails-app/controllers/org/bbop/apollo/OrganismController.groovy b/grails-app/controllers/org/bbop/apollo/OrganismController.groovy
@@ -1277,6 +1277,7 @@ class OrganismController {
     , @RestApiParam(name = "metadata", type = "string", paramType = RestApiParamType.QUERY, description = "organism metadata")
     , @RestApiParam(name = "organismData", type = "file", paramType = RestApiParamType.QUERY, description = "zip or tar.gz compressed data directory (if other options not used).  Blat data should include a .2bit suffix and be in a directory 'searchDatabaseData'")
     , @RestApiParam(name = "noReloadSequences", type = "boolean", paramType = RestApiParamType.QUERY, description = "(default false) If set to true, then sequences will not be reloaded if the organism directory changes.")
+    , @RestApiParam(name = "returnAllOrganisms", type = "boolean", paramType = RestApiParamType.QUERY, description = "(optional) Return all organisms (true / false) (default true)")
   ])
   @Transactional
   def updateOrganismInfo() {
@@ -1349,7 +1350,10 @@ class OrganismController {
       } else {
         throw new Exception('organism not found')
       }
-      findAllOrganisms()
+
+      Boolean returnAllOrganisms = organismJson.returnAllOrganisms!=null ? Boolean.valueOf(organismJson.returnAllOrganisms) : true
+      render returnAllOrganisms ? findAllOrganisms() : new JSONArray()
+
     }
     catch (e) {
       def error = [error: 'problem saving organism: ' + e]