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Add sequence search plugin #3150

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cmdcolin opened this issue Aug 19, 2022 · 1 comment
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Add sequence search plugin #3150

cmdcolin opened this issue Aug 19, 2022 · 1 comment
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enhancement New feature or request

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@cmdcolin
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cmdcolin commented Aug 19, 2022

Has been requested a couple times, can be complementary to genome wide search

Some user motivation


For sequence searching, in the past I have used IGVs "find motif" feature: https://software.broadinstitute.org/software/igv/motif_finder

Something like that would be very convenient for searching for primers and things like that without having to engineer it to use an external aligner (I would probably use bowtie for exact matches of small sequences). 

Even just a search of the viewing window, like JBrowse 1, would be very convenient.

from @malonge

@cmdcolin cmdcolin added the enhancement New feature or request label Aug 19, 2022
@cmdcolin
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fixed by #3159

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