bugfix to how BAM feature end coords are calculated

GMOD · Oct 23, 2012 · 15c181d · 15c181d
1 parent dca9c98
commit 15c181d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/JBrowse/Store/SeqFeature/BAM/Feature.js b/src/JBrowse/Store/SeqFeature/BAM/Feature.js
@@ -34,7 +34,7 @@ var Feature = Util.fastDeclare(
 
         // figure out start and end
         data.start = data.start || data.pos;
-        data.end = data.end || ( data.lref ? data.pos + data.lref : data.seq ? data.pos + data.seq.length : undefined );
+        data.end = data.end || ( data.length_on_ref ? data.pos + data.length_on_ref : data.seq ? data.pos + data.seq.length : undefined );
 
         // trying to determine orientation from 'XS' optional field,
         // or from the seq_reverse_complemented flag