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add volvox data to keep control of config file changes. remove this l…
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rbuels committed Mar 19, 2012
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1 change: 0 additions & 1 deletion .gitignore
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Expand Up @@ -9,7 +9,6 @@ bin/wig2png
*.pyc
*TODO.txt
Makefile
/sample_data/json
wig2png/config.log
wig2png/config.status
wig2png/src/config.h
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1 change: 1 addition & 0 deletions sample_data/json/volvox/names/root.json
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1 change: 1 addition & 0 deletions sample_data/json/volvox/seq/ctgA/0.txt

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1 change: 1 addition & 0 deletions sample_data/json/volvox/seq/ctgA/1.txt

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1 change: 1 addition & 0 deletions sample_data/json/volvox/seq/ctgA/2.txt
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@@ -0,0 +1 @@
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c
1 change: 1 addition & 0 deletions sample_data/json/volvox/seq/ctgB/0.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
ACTGATCGATGATGACTGACTAGTAGAACATGCTAGCTACGTGCATGCTCGACATGCATCATCAGC
18 changes: 18 additions & 0 deletions sample_data/json/volvox/seq/refSeqs.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
[
{
"length" : 50001,
"name" : "ctgA",
"seqDir" : "seq/ctgA",
"seqChunkSize" : 20000,
"end" : 50001,
"start" : 0
},
{
"length" : 66,
"name" : "ctgB",
"seqDir" : "seq/ctgB",
"seqChunkSize" : 20000,
"end" : 66,
"start" : 0
}
]

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