start of a biodb conf file for tomato, hopefully to become a test dat…

…a set for larger genomes
GMOD · Mar 6, 2012 · 6865fd5 · 6865fd5
1 parent 7e1c4fd
commit 6865fd5
Showing 1 changed file with 27 additions and 0 deletions.
diff --git a/sample_data/raw/tomato.json b/sample_data/raw/tomato.json
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+{
+  "description": "Tomato ITAG2.3 Annotation",
+  "db_adaptor": "Bio::DB::SeqFeature::Store",
+  "db_args": { "-adaptor": "berkeleydb3",
+               "-dir": "sample_data/raw/tomato" },
+
+  "TRACK DEFAULTS": {
+    "class": "feature",
+    "autocomplete": "all"
+  },
+
+  "tracks": [
+    {
+      "track": "eugene",
+      "key": "Gene models",
+      "feature": ["mRNA:ITAG_eugene"],
+      "autocomplete": "all",
+      "class": "transcript",
+      "subfeatures": true,
+      "subfeature_classes": {
+        "CDS": "transcript-CDS",
+        "five_prime_UTR": "transcript-UTR",
+        "three_prime_UTR": "transcript-UTR"
+      }
+    }
+  ]
+}