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tweak order of release notes
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rbuels committed Nov 2, 2012
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Showing 1 changed file with 15 additions and 15 deletions.
30 changes: 15 additions & 15 deletions release-notes.txt
@@ -1,5 +1,20 @@
{{$NEXT}}

* Added a new data backend to allow direct access to BAM files over
the web without needing to translate them to JSON with
`bam-to-json.pl`. This new method of BAM access is far superior to
the old `bam-to-json.pl` in nearly every way, except in browser
compatibility. Like the BigWig direct access backend added in
JBrowse 1.5.0, it works in all major browsers *except* Internet
Explorer, because IE lacks support for the necessary web standards.
It may work with Internet Explorer 10, but this has not been tested
yet.

* Added a new `Alignments` track type designed to work seamlessly
with BAM files. This track type shows basepair differences and
insertions between aligned reads and the reference, and highlights
reads with missing mate-pairs in red.

* Added the ability to export track data in FASTA, GFF3, bed,
bedGraph, and Wiggle formats (issue #104). To export data, turn on
the track of interest, then click on its track label to bring up
Expand All @@ -21,21 +36,6 @@
distinguish at a glance between regions with no data, and regions
with a value of 0.

* Added a new data backend to allow direct access to BAM files over
the web without needing to translate them to JSON with
`bam-to-json.pl`. This new method of BAM access is far superior to
the old `bam-to-json.pl` in nearly every way, except in browser
compatibility. Like the BigWig direct access backend added in
JBrowse 1.5.0, it works in all major browsers *except* Internet
Explorer, because IE lacks support for the necessary web standards.
It may work with Internet Explorer 10, but this has not been tested
yet.

* Added a new `Alignments` track type designed to work seamlessly
with BAM files. This track type shows basepair differences and
insertions between aligned reads and the reference, and highlights
reads with missing mate-pairs in red.

* Added a new `FeatureCoverage` track type, which shows a
dynamically-computed XY-plot of the depth of coverage of features
across a genome. One good use of this track type is to provide a
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