-
Notifications
You must be signed in to change notification settings - Fork 199
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
added test data consisting of volvox formatted with the 1.2.1 release
- Loading branch information
Showing
36 changed files
with
207 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,11 @@ | ||
| refSeqs = | ||
| [ | ||
| { | ||
| "length" : 50001, | ||
| "name" : "ctgA", | ||
| "seqDir" : "seq/ctgA", | ||
| "seqChunkSize" : 20000, | ||
| "end" : 50001, | ||
| "start" : 0 | ||
| } | ||
| ] |
Large diffs are not rendered by default.
Oops, something went wrong.
Large diffs are not rendered by default.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| ggcgtggaggcatagggccggagtgttcccgtaccaattacgagctaagaccgcctgtccagccctggtgattacgtagtaagctcggtacaagcctgtaattagcttccgggtggcggacattcgttcatattgccagtcacggcagaggccgcgctagctaggccagccccgatgaaacacgtgctagttttctatcgtgcctaaggatcgatggctatcgcggcattgttaacttatcaagcagccgaatcggcgatagtggacacaacatgaacacgctaagctctgagtgccagactctaccgcggcgaatcctaggccctgctggggctcccccacagagcagtaatggtcttctgcggccgcgtgcattcaatccgcgctggtcaatgcgttccatcgtgccttaagcggggcagtgtgataagacaattttgggggtttcatggagatatcttcagaaacctcgcgaggtgcgtttagataccacacgcgcggcggtcttttcacacaattcagtccgcggccggtaacctaactttgcttatcaatacataatcctcccaaatgtacggtttcgaaggagatacctctcccctgttagactctaggttttgcagtgctacctagagatcacaccagcattaaaccaaggtatcagcatcgtaacatggggaggcacgcgcttggcggtaagtacccgccacgattactctgtttcatagcgccaacgcccgtatagtgtgcttttaacgtcctcagaaatcaccgactgatcagtatggcgacatcggagggaggttggcgaaatgttgcttttatagatcgttaaaacctatcgttggcgcgtatcgcctccatagaacttcttactcacctagtctgatcccgggactggtcgaaatggagacgacgtagcttgagatctggatcgatcgactgatatcacacttaaatatgatcagattttactacggtcgatctccatatatctatcccagcacttgatacctcctgtccagccgactgcttggaccctagcacgcgatattagagggcgcgttgtagctcaaagtaaccagtgggacgacccgagtgaggttaccgctggcacgtaagggtgacatgactcccccagaaacactgaatttgtctagcagtacatcataatctgagaacatttagcgaagacgagaacaagctgtctcaatggacgtaggacgagaggaatgtgacggttataatacgcgacctctatgtgtctattaaatccctacgggccgtagcgagcaagctcgggatctttagtagcggatcgggtcttctacatggcgcaccaggtttgatatttcgagctagagttgctctaaagaaacgctcttgcttgggaaagtgacctggggtacgacgaagacacgggcctggttgcataccgtctcaccttcattcatcgagcgcgatagcgtagcattatccagcacgggaggcacctggcatgggcgtgaaatacaatccgaagagcagcatgaaaaaaaaatgagcggtcgtgacccgagggtgcgtccctccgaacgttgttcgttgccaaggtaagggacccacgccaagcatggttagggaagcgtgaccgacacaacatagaggacaatctcaatatgccttctgggtatcacctgggtgtgtagcagtgctactgttacaagtcgcgccatctgcgacgtcgttcgtccctattccctcctaaaggccccgactctgaaaaaacctacaatcctagacacgttgtggcccagcacaacgcgtctgctatacagcaagtcattcgtcgaatggggcaacacgtataagaaggccgtgattccaagggcacatggcgggtctctcaatgatctacgacgtgacgcaaacggggaaaggctggaccgttgtccggtaggcgatccatcataaaaggcgtctggttctgtggttattgtgtacacgtttgaaatatctgactgtagaacgatggaggtctctacgtagctctgcacgattccctcgggctcacgttcatggcaaggcgacatcacatgaacagggttgggtaacagccatctctgaagcattcccccagctcgcacggctcctttacccgctactacgtcatgcactggctagagacccaccaactattgtgcaagtaaagaccataaaattttggagctgtagcgaaagcgagttgctgcgatggttagaccaacattgggtcaaactattctaatccggctaggctcattaagcatcgcagattgccgatactaatgctaacgagcgatgaatgggcctcttcgagacgcgtccgtacctgcgaatatcaaccatgaaccctaatctggaaagtttgatgccgctgtgatagccactcctgtgtcgcgacggcaacgtaatgtacgtgcttggtttgagctctaaacataccttcgttagagttggtcagaggaggatattgtcatagcgctacaaccagcgccaaaggatagctccgtggctggtcggacgcgctagaatctaggcagaacacgtgcggcttcttgcactctgacgctcacgcattggactttggcggtcatctggttctcataagtccgaatcacagtagataaagatccgcgtgataagatatgcctacgtacttaagtagcaccctctgttcttggcgatcctatcattgcgggttctatacatatgttgatccaaccatcggccgccgggccgtcgtaggatctaatggccaacacatcaatcaaatcactcgcgaggacgcggaggtcccgtccataggtgtgtatgttggtacgcagcacctaatctggtctggtcaagcaactggcttgttccagtatataatctcagatagactgccctgaaagtagacaatgataaatatgtaagagcggggaaatcccatcgtcgactgtgttgcggacgattagcttgcaaagagaggtgtgagcggctgtcttaaattatggactcctcgcttccgtcgaacgtctgactagagaatctcttggaggtacacacgaacgtaggttcctcacagtatgtggcatggacaccggacaggtcacttgtatttatccattgaacgtgatatagtgtgtcgagtcgttatacaatacatactccaagcgtactccctttgggtaacgggtttgggtacatattaccatggtgtggaccgatttgtaaccctataagcgttccgggtactttaccatcgcggatgcgatcgcggatctacctatgtcagcgacatactgcccgtccaaaagtgattcagtatgtgttaatcagcgtattgcatcatcagtcattgagagtggaccgttctcgaagagcaagattcctgaccctttccactgggccatccagtacacccaattatatgcagacgaaaagctccatacatatataatacctcttcacaccgtgtgcagagaccaacttgatcgatattgtactcactcgtacggaataattagaagggcccgactgtcgagaccgttagcatttgcattatcgcggtgagcgtatagaaacaattataggctttgctgcgatcgcagtgtctgggacagagtctcctagacctagatcagcttaaaacaatgattgtaggtaatgtgcgttgccgtcgggccacacctttcagttcggttacaccgactcagaattatcttctatcgggaccctcaaactgataatggggtcaaatggtggtggtcccgtctttctgcagtgctttgtgagcagaatagctctcgagcgctccagtacgcctgagtatggctgcgcccaccaattggcgccgttaatgcgtggcgacacaagagaaccagtccacataagttatgcccttaagaagatcaccgggtttgcgccatcctgattcaggtaacggacgtccgtgtacacgaaccatactaatgagttctacatcgctccaacgcgtcttgaaccctatcgacaattacaaatgcaaagtattagttgggtcagtgcgtagcttatccaagggctgcagtaagtcgtccccatgacagacggacggcataagggccaaaaattccgccgcattagctgttaataatgccatccagaaccggacagtctcgatatataacttacggctgcgaactggcccttatgaattacatccacgtgctagttaacaggacggatcgcccggactaattgccgatcggccgtcccattctccgtacgatgtactgaacccaggcgtgtgaatgggtatgtcaacgtttacccatcgaccctgcctatagacctgagtttcattccagttgagcgtagaatgggatgagcagctttgcttgaggtgcgatattcgggagacctggtcagcaggattgatggttttatagtgctggattccctgctgaaattctctcttctgccgcatgtgaagaaggccttgcttcccttccacatgattgtaagatttcctaaggcctcccagctgcgtggaactgtgagtcaattaaacctctttcctttataaattacccagtctcaggtatttccttatcgtggtatgagaacggattaatacagttgtgtaagccagctccttataataaatctctctccctctctctgcctctcatctatgtatgtatgtatctgtcatctatctcctataagttgtttcttttgagaactctgactaacatagacattaaataaacaatttgtatactgaataattatataactactgcttgggggtgtggttgtgttgtgtggtgagggggtgtagaaatgtctaggggttgatctagcctaacaccttccagatgaccctaggttctggcctttccccaaagagtcctggtctactcagtcatctcccacaatttggccatcttcttgggtgctcaggacaataaatgacccagccagatcctctagagtcgacctgcaggcatgcaagcttggcgtaatcatggtcatagctgtttgctgtgtgaaattgttatgcgctcacattgcacacaacatacgagccggaagcatacagtgtagagcctggggtggcgtatgagtgagctaactcacattaatttgcgtttgcgctcactgccgcttttcagtcggggaaactgtcgtgacagctgcatttaatgatcggtcatcgcgcggggagatgcggttttgcgtattgtgccgcaggtggttatttctctcaacagtgagacgggcacagctgattgccctcaccggctgggctgagagagttgcagcaagcgtacacgcggggtttgcccagcagggcgaaattcctgttgtgatgtggattccgaatcgggcaaatgccctataaatcaaagcatagtccgagatagggtttgagtgtgttcagttttgggacagaggtcactataaagaacgttgactgcacgtcaagggcgagaaacgtcatcaggcgattgcactacgtgacatcaccaatcagttttttgggtcaggtgcgtgagacttatcggaactaaaggagcccgttttagcttcggggaaacgcgaagtgtcggaagaaggaaaacgaagagcgggtatcgcggaatgtacgtgctgagcgaaaccaacgcgcgttacggtcaagcgtgtatgtgttttggaggtaagtttccctgataaagcggaacaggggctatgtgtttacgggggtcgcatggagtacaagggggcaggacaagatttgcgcgacatggttttttttaaattgcgggagatggttggctgtcccgatgagattagaacctgcttttgttttagtttcggttcggtcagttcggactttggattggttttgttgggtatttaagaagggtgtttgtgggatgtttttttttgggtcgagcatcactggactatgtgtgtcctgcgtatcgtggcggggcctcgaacttagaggtaggacgattccgatgcaacaaccttatgctttactccaagcgatggtgaggcaaccttgtacagaagtgcaaccgccattgtggctgggtcggcccaaggaacggatattctcctgggtactgacaacccaggtctactgggttctatcgacggtacagtcaagcctcgagtttactgtctcccacttaagtccgctctgggcattaatgagtctgtggggtatcaagggtcacccaacgaagtagctagtcccgttgtacatttcgcgcgttacctagggagcacggtgagctacgagggtgtagctgcacacagcacggtatataggaacgcaaacatagtagtatgtccctatgcataacagggagaagtgactctccgacggtcatttatcccagactctcctcgctccctactaattgttctatatacaatcggagtaaattggtacctctctgacaacataggggggttgaagtttatgccacgcagtctgttacacttttgccggggaattgtgtagaccatgactcaaggtggtggtgcgagttactctactatctactgcttctcattacacatctcttggcttacaggccccagttatcagttacgaggctgccttaagagaaggccaacattcatgatcagatccccgcacacgggatgatagtctgagatctgccggacgctcgtctgctacaagtgtgggttgagcatagggtaagcctaagggctcgtaatggtacttcgcgatgtttattcgatatgagctacaaggtataacgttgccttcaccatttcggctcacgactcttacctcgcctcaccgctagacaccctgaccaaccgttagggtactgacaaccgatcaggcgactcctaaaggacctctcagcctcccagacatgaggtccgctcgcatgctgttcagcgagtccatatcaggaacagcaacgagacaaggcgagagcaacactagacttggagacataccaccacatctgtttactcttgattcaggaagacctgtggtaactgggcgacgcgtgcgtttatccgtcttccaatctccacagaatctgctccgtcagagggatgtatgactaacgcactgattttttgttcagtaaccgggcgcggattacggggcgtattccaggggtacattcaacgggaccccaaggaaaagttcggggtatttaaggaggcggtccaactctcggacttattgggcgacgtaatgataagcacacctctgctcatacagtgcacgaagaccggcattgttcaaacacagccgtccattccgcgactattgtcctgtgtacaggtgcctcgggtcccaaatccagcttatacccaaaactctcccggacttttttcgtccttgcaggaggaaaggacctgactccacgtttattaggggatcgttgggcccggacaatcgtgtattcaacataataaatgggttctagtttaaagccggaggtgacggtggattatggactagaggtaaacatttccggcgtaggtcagaaagaatatagaccctaaatttacgcaaaacgtgcacacgattgtaggtggagtcgtattaggaactcagggcgggtggaacgagtgtgttttaggcttaccatgaaccgtcgcgcggaaaatgatgacagaatggacggtgcttttttgcggggccaacaaaactcgcttatgttcgccattggatgtaagtaccgctatactacgcagcgaccccttacgacattgttgatttccaatgctttcatggaggtttgtgagcggtcgctaggaatcttcctccagcgagtagccagctggccactagttagcaaccagagttcatatgagctccagtaacacgaaggtacataaggaacgcaagcaagttcgggactacatagaacttggggtgcgtctaagccggggatcttaatagacaagaggccatcgtatgggtcaaatttcatgtttcgtcagatgccctatccgtggacacctaaatcaagcatcatatcctaatgctatttgctctcgctttggtatgattcatatgcagccctgtccgtaaaatgacgggccagaggatacctgtcactacctatttcagattaccactgttcgaaaccttgctctgaaatcgatcttcgtagagtgttcgttaatcgccgcgtgaattatataatcccccaaggagtacccttcgtcggtgcagtctacgtaactttcccaggttagcccccatctaatcgacgtacgtgagggggctacgggagatcgcacaagccgaagcatttctgctctgtttcgttacaactggaatcctcatcacgcagcgctaccggatgccatccctagtcatccccgcgagtttaaccagtcgagatggctcgaaccgtgtttcgaaggctggctattgaaccagttataaagcaggggcgactgtccgtcggacttcgatataaactatcacaaatttggcataagtatatacagccaagaaggctcagataggcacacgcacccaaatagtgaccgcctacgttcaggttgcccggcaacgaagcgcgcttgctccattaatccactatcagaggtaacgaccctctttcaccgtagctgcccccatgtcggggcaacagtttcccaccgataacgtgttctgtctagtacgtgaaacggattggctaacccctgtcagcctaattagatgacatcctcgtacctctagagaaggtgaggagaccgctggaacataagtaaacagtttaccaaacaatgatcatacatataacagaaaggagagatgcccggtggggtcgaagatacagctgtggttgatatctgcaacggccaggctgtcatgaagatcacgcgcacgaagctatttatgaaagatacccatgccggggcggcagcggtacctagtcctaaataccgacacgtagcaacgcgtcccctgaggcccaccctagtcaagggaacttaaaatatacgctgactttgtctaccaatcatcttcgattaacaccggcatactaagtctaccctggacccagcaatgagaaaaacttttccgaatgatcattgtgagtttacagagattaggaacaccaaaaaaatttacgtacgtccggttacccctgtgtgacccttggccacaaaccgtaaggtgcagcatgggcgttgagtccagggtttgtgacaccagacatgaataccctgtggcgggttgttagcatgttattcggatccgatttcagagggtccgttgataccgggcagtacaagacaccccacaccactgaggtggtacgtccgccagtctgctccctacgttatgcaaaattccttccccggcgttcttgcctgtactactcctaaagggccgtgaaatccgacgttgctgctccgtctcgggacacccacacaacagctacggaaaatcgtgaggatgcacaagggtcttgcattgttgatctatacagctcttcgcacggtgtgctactgttttccacaatgggcaaggggcgtgtaggtcttatgtaggagtaccccgtgatctggctataccttgctatctattccaccaaaatagccggggtcttatagttttattccggatctatcaagtgacaagtccatggggtaaacggtaagtttcgtacgctgggcggtgatccccgcttataaacgagcaaaccgccaaagcaaccattgccgggcttccagctagtaaatgttgggtgtcaatcgtgcatgtgactacttacccacaaagggacgcttgaagcgcctgaactcgtcacgtcatgcctagctcccggttgaaacacgaagacgcgtgaacctatctttgcttactattcgcctcctttaagaggcttcttgatgtggctctgcgacatggacagtagtagttgtacctgggtatgttagtgaaattacaagtacctcaaaaacgaattacgtgtatagagattatgtcactccgtcac |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,78 @@ | ||
| trackInfo = | ||
| [ | ||
| { | ||
| "url" : "seq/{refseq}/", | ||
| "args" : { | ||
| "chunkSize" : 20000 | ||
| }, | ||
| "label" : "DNA", | ||
| "type" : "SequenceTrack", | ||
| "key" : "DNA" | ||
| }, | ||
| { | ||
| "url" : "tracks/{refseq}/ExampleFeatures/trackData.json", | ||
| "type" : "FeatureTrack", | ||
| "label" : "ExampleFeatures", | ||
| "key" : "Example Features" | ||
| }, | ||
| { | ||
| "url" : "tracks/{refseq}/NameTest/trackData.json", | ||
| "label" : "NameTest", | ||
| "type" : "FeatureTrack", | ||
| "key" : "Name test track" | ||
| }, | ||
| { | ||
| "url" : "tracks/{refseq}/Motifs/trackData.json", | ||
| "type" : "FeatureTrack", | ||
| "label" : "Motifs", | ||
| "key" : "Example motifs" | ||
| }, | ||
| { | ||
| "url" : "tracks/{refseq}/Alignments/trackData.json", | ||
| "label" : "Alignments", | ||
| "type" : "FeatureTrack", | ||
| "key" : "Example alignments" | ||
| }, | ||
| { | ||
| "url" : "tracks/{refseq}/Genes/trackData.json", | ||
| "type" : "FeatureTrack", | ||
| "label" : "Genes", | ||
| "key" : "Protein-coding genes" | ||
| }, | ||
| { | ||
| "url" : "tracks/{refseq}/ReadingFrame/trackData.json", | ||
| "label" : "ReadingFrame", | ||
| "type" : "FeatureTrack", | ||
| "key" : "Frame usage" | ||
| }, | ||
| { | ||
| "url" : "tracks/{refseq}/CDS/trackData.json", | ||
| "type" : "FeatureTrack", | ||
| "label" : "CDS", | ||
| "key" : "Predicted genes" | ||
| }, | ||
| { | ||
| "url" : "tracks/{refseq}/Transcript/trackData.json", | ||
| "label" : "Transcript", | ||
| "type" : "FeatureTrack", | ||
| "key" : "Exonerate predictions" | ||
| }, | ||
| { | ||
| "url" : "tracks/{refseq}/Clones/trackData.json", | ||
| "type" : "FeatureTrack", | ||
| "label" : "Clones", | ||
| "key" : "Fingerprinted BACs" | ||
| }, | ||
| { | ||
| "url" : "tracks/{refseq}/EST/trackData.json", | ||
| "label" : "EST", | ||
| "type" : "FeatureTrack", | ||
| "key" : "ESTs" | ||
| }, | ||
| { | ||
| "url" : "tracks/{refseq}/volvox_microarray.wig.json", | ||
| "type" : "ImageTrack", | ||
| "label" : "volvox_microarray.wig", | ||
| "key" : "volvox_microarray.wig" | ||
| } | ||
| ] |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/hist-10000-0.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| [2,3,6,7,4,2] |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/names.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| [[["seg08"],"Alignments","seg08","ctgA",18508,25367,"44"],[["seg12"],"Alignments","seg12","ctgA",12530,15870,"48"],[["seg14"],"Alignments","seg14","ctgA",41136,47829,"50"],[["seg03"],"Alignments","seg03","ctgA",6884,8999,"39"],[["seg05"],"Alignments","seg05","ctgA",26502,35904,"41"],[["seg09"],"Alignments","seg09","ctgA",36615,37227,"45"],[["seg04"],"Alignments","seg04","ctgA",5232,9825,"40"],[["seg13"],"Alignments","seg13","ctgA",49405,50000,"49"],[["seg06"],"Alignments","seg06","ctgA",19248,23427,"42"],[["seg10"],"Alignments","seg10","ctgA",29770,32937,"46"],[["seg15"],"Alignments","seg15","ctgA",39264,48453,"51"],[["seg11"],"Alignments","seg11","ctgA",24227,30738,"47"],[["seg02"],"Alignments","seg02","ctgA",26121,34466,"38"],[["seg01"],"Alignments","seg01","ctgA",32328,32359,"37"],[["seg07"],"Alignments","seg07","ctgA",44190,50000,"43"]] |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/Alignments/trackData.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| {"histogramMeta":[{"basesPerBin":"10000","arrayParams":{"length":6,"chunkSize":10000,"urlTemplate":"hist-10000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name"],"lazyIndex":2,"featureCount":15,"histStats":[{"bases":10000,"max":7,"mean":4}],"featureNCList":[[5232,9825,-1,"40","seg04",[[6884,8999,-1,"39","seg03"]]],[12530,15870,1,"48","seg12"],[18508,25367,1,"44","seg08",[[19248,23427,1,"42","seg06"]]],[24227,30738,1,"47","seg11"],[26121,34466,1,"38","seg02"],[26502,35904,-1,"41","seg05",[[29770,32937,1,"46","seg10",[[32328,32359,1,"37","seg01"]]]]],[36615,37227,-1,"45","seg09"],[39264,48453,-1,"51","seg15",[[41136,47829,-1,"50","seg14"]]],[44190,50000,-1,"43","seg07"],[49405,50000,1,"49","seg13"]],"key":"Example alignments","className":"feature4","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"Alignments","type":"FeatureTrack","sublistIndex":5,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"} |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/CDS/hist-50000-0.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| [3,0] |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| [[["Apple1"],"CDS","Apple1","ctgA",9999,11500,"52"],[["Apple3"],"CDS","Apple3","ctgA",17399,23000,"54"],[["Apple2"],"CDS","Apple2","ctgA",12999,17200,"53"]] |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/CDS/trackData.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| {"histogramMeta":[{"basesPerBin":"50000","arrayParams":{"length":2,"chunkSize":10000,"urlTemplate":"hist-50000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name","phase"],"lazyIndex":2,"featureCount":3,"histStats":[{"bases":50000,"max":3,"mean":1.5}],"featureNCList":[[9999,11500,1,"52","Apple1","0"],[12999,17200,1,"53","Apple2","0"],[17399,23000,1,"54","Apple3",null]],"key":"Predicted genes","className":"cds","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"CDS","type":"FeatureTrack","sublistIndex":6,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"} |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/hist-200000-0.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| [1] |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/names.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| [[["b101.2"],"Clones","b101.2","ctgA",999,20000,"81"]] |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/Clones/trackData.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| {"histogramMeta":[{"basesPerBin":"200000","arrayParams":{"length":1,"chunkSize":10000,"urlTemplate":"hist-200000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name"],"lazyIndex":2,"featureCount":1,"histStats":[{"bases":200000,"max":1,"mean":1}],"featureNCList":[[999,20000,0,"81","b101.2"]],"key":"Fingerprinted BACs","className":"exon","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"Clones","type":"FeatureTrack","sublistIndex":5,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"} |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/EST/hist-50000-0.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| [6,0] |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| [[["agt830.5"],"EST","agt830.5","ctgA",1049,3202,"84"],[["agt767.3"],"EST","agt767.3","ctgA",7999,9000,"89"],[["agt221.3"],"EST","agt221.3","ctgA",7499,8000,"87"],[["agt221.5"],"EST","agt221.5","ctgA",1049,7300,"86"],[["agt767.5"],"EST","agt767.5","ctgA",1149,7200,"88"],[["agt830.3"],"EST","agt830.3","ctgA",5409,7503,"85"]] |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/EST/trackData.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| {"histogramMeta":[{"basesPerBin":"50000","arrayParams":{"length":2,"chunkSize":10000,"urlTemplate":"hist-50000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name"],"lazyIndex":2,"featureCount":6,"histStats":[{"bases":50000,"max":6,"mean":3}],"featureNCList":[[1049,7300,1,"86","agt221.5",[[1049,3202,1,"84","agt830.5"],[1149,7200,1,"88","agt767.5"]]],[5409,7503,-1,"85","agt830.3"],[7499,8000,-1,"87","agt221.3"],[7999,9000,-1,"89","agt767.3"]],"key":"ESTs","className":"est","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"EST","type":"FeatureTrack","sublistIndex":5,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"} |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/hist-10000-0.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| [4,3,4,3,4,1] |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/names.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| [[["f13"],"ExampleFeatures","f13","ctgA",19156,22915,"7"],[["f12"],"ExampleFeatures","f12","ctgA",49757,50000,"16"],[["f02"],"ExampleFeatures","f02","ctgA",24561,28338,"10"],[["f09"],"ExampleFeatures","f09","ctgA",36033,38167,"11"],[["f03"],"ExampleFeatures","f03","ctgA",36648,40440,"12"],[["f11"],"ExampleFeatures","f11","ctgA",46989,48410,"15"],[["f07"],"ExampleFeatures","f07","ctgA",1658,1984,"2"],[["Remark:hga","hga"],"ExampleFeatures","Remark:hga","ctgA",999,2000,"17"],[["f01"],"ExampleFeatures","f01","ctgA",44704,47713,"14"],[["f04"],"ExampleFeatures","f04","ctgA",37241,38653,"13"],[["f10"],"ExampleFeatures","f10","ctgA",15328,15533,"6"],[["f06"],"ExampleFeatures","f06","ctgA",3013,6130,"3"],[["f14"],"ExampleFeatures","f14","ctgA",23071,23185,"9"],[["f15"],"ExampleFeatures","f15","ctgA",22131,24633,"8"],[["f05"],"ExampleFeatures","f05","ctgA",4714,5968,"4"],[["f08"],"ExampleFeatures","f08","ctgA",13279,16394,"5"]] |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/ExampleFeatures/trackData.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| {"histogramMeta":[{"basesPerBin":"10000","arrayParams":{"length":6,"chunkSize":10000,"urlTemplate":"hist-10000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name"],"lazyIndex":2,"featureCount":16,"histStats":[{"bases":10000,"max":4,"mean":3.16666666666667}],"featureNCList":[[999,2000,0,"17","Remark:hga",[[1658,1984,1,"2","f07"]]],[3013,6130,1,"3","f06",[[4714,5968,-1,"4","f05"]]],[13279,16394,1,"5","f08",[[15328,15533,1,"6","f10"]]],[19156,22915,-1,"7","f13"],[22131,24633,1,"8","f15",[[23071,23185,1,"9","f14"]]],[24561,28338,1,"10","f02"],[36033,38167,1,"11","f09"],[36648,40440,-1,"12","f03",[[37241,38653,1,"13","f04"]]],[44704,47713,-1,"14","f01"],[46989,48410,-1,"15","f11"],[49757,50000,-1,"16","f12"]],"key":"Example Features","className":"feature2","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"ExampleFeatures","type":"FeatureTrack","sublistIndex":5,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"} |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/Genes/hist-200000-0.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| [1] |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| [[["EDEN"],"Genes","EDEN","ctgA",1049,9000,"60"]] |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/Genes/trackData.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| {"histogramMeta":[{"basesPerBin":"200000","arrayParams":{"length":1,"chunkSize":10000,"urlTemplate":"hist-200000-{chunk}.json"}}],"subfeatureClasses":null,"headers":["start","end","strand","id","name"],"lazyIndex":2,"featureCount":1,"histStats":[{"bases":200000,"max":1,"mean":1}],"featureNCList":[[1049,9000,1,"60","EDEN"]],"key":"Protein-coding genes","className":"feature5","clientConfig":null,"arrowheadClass":null,"subfeatureHeaders":["start","end","strand","type"],"label":"Genes","type":"FeatureTrack","sublistIndex":5,"lazyfeatureUrlTemplate":"lazyfeatures-{chunk}.json"} |
1 change: 1 addition & 0 deletions
1
tests/data/volvox_formatted_1_2_1/tracks/ctgA/Motifs/hist-10000-0.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| [0,7,3,4,3,0] |
Oops, something went wrong.