beginnings of Pythium selenium test for webapollo

plugins/WebApollo/tests/selenium_tests/lib/WebApolloTest.py

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+import os
+import sys
+import time
+sys.path.append( 'tests/selenium_tests' ) # relative to JBrowse root
+
+from jbrowse_selenium import JBrowseTest
+
+class WebApolloTest (JBrowseTest):
+
+    wa_url = None
+
+    def setUp( self ):
+        super( WebApolloTest, self ).setUp()
+        self.login( os.environ['WA_USER'], os.environ['WA_PASS'] )
+        self.browser.get( self.baseURL() )
+
+    def baseURL( self ):
+        return self.waURL()+'/jbrowse/index.html'
+
+    def waURL( self ):
+        if not self.wa_url:
+            self.wa_url = os.environ['WA_URL']
+        return self.wa_url
+
+    def login( self, username, password ):
+        self.browser.get( self.waURL() + '/Login' );
+        username_input = self.assert_element('//input[@id="username"]')
+        password_input = self.assert_element('//input[@id="password"]')
+        username_input.send_keys(username)
+        password_input.send_keys(password)
+        login_button = self.assert_element('//button[@id="login_button"]')
+        login_button.click()
+        time.sleep( 0.4 )
+        pass
+

plugins/WebApollo/tests/selenium_tests/lib/__init__.py

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+from WebApolloTest import WebApolloTest
+

plugins/WebApollo/tests/selenium_tests/pythium_test.py

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+import unittest
+from lib import WebApolloTest;
+
+class PythiumTest(WebApolloTest, unittest.TestCase):
+
+    data_dir = 'sample_data/json/volvox'
+
+    def setUp( self ):
+        # call( "rm -rf sample_data/json/volvox/", shell=True )
+        # call( "bin/prepare-refseqs.pl --fasta docs/tutorial/data_files/volvox.fa --out sample_data/json/volvox/", shell=True )
+        # call( "bin/biodb-to-json.pl --conf docs/tutorial/conf_files/volvox.json --out sample_data/json/volvox/", shell=True )
+        # call( "bin/wig-to-json.pl --out sample_data/json/volvox/ --wig docs/tutorial/data_files/volvox_microarray.wig", shell=True )
+        # call( "bin/add-track-json.pl sample_data/raw/volvox/volvox_microarray.bw.conf sample_data/json/volvox/trackList.json", shell=True )
+        # call( "bin/add-track-json.pl sample_data/raw/volvox/volvox-sorted.bam.conf sample_data/json/volvox/trackList.json", shell=True )
+        # call( "bin/add-track-json.pl sample_data/raw/volvox/volvox-sorted.bam.coverage.conf sample_data/json/volvox/trackList.json", shell=True )
+        # call( "bin/generate-names.pl --dir sample_data/json/volvox/", shell=True )
+        super( PythiumTest, self ).setUp()
+
+
+    def test_pythium( self ):
+        test_ref = 'scf1117875582023';
+        # select "ctgA from the dropdown
+        self.select_refseq( test_ref )
+
+        # check a good browser title
+        assert test_ref in self.browser.title, "browser title is actually %s" % self.browser.title
+
+        self.browser.close()
+