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Visualize supplementary alignments #1280

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cmdcolin opened this issue Dec 10, 2018 · 0 comments
Open

Visualize supplementary alignments #1280

cmdcolin opened this issue Dec 10, 2018 · 0 comments
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feature req this adds new functionality to JBrowse 1

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@cmdcolin
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I don't have a lot of info on this but the supplementary alignment concept in BAM/CRAM uses a special "SA" tag with extra information about an alignment and also assigns the same read name to multiple records similar to paired end sequencing reads. Could be worth looking into
@cmdcolin cmdcolin added the feature req this adds new functionality to JBrowse 1 label Dec 20, 2018
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