Skip to content

Commit

Permalink
update documentation
Browse files Browse the repository at this point in the history
  • Loading branch information
alenaizan committed Nov 7, 2020
1 parent 757fa49 commit 77ea54b
Show file tree
Hide file tree
Showing 166 changed files with 1,054 additions and 534 deletions.
6 changes: 3 additions & 3 deletions docs/html/Chain_8cpp.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.17"/>
<meta name="generator" content="Doxygen 1.8.18"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>The proto-Nucleic-Acid Builder (pNAB): Chain.cpp File Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
Expand Down Expand Up @@ -36,7 +36,7 @@
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.17 -->
<!-- Generated by Doxygen 1.8.18 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
var searchBox = new SearchBox("searchBox", "search",false,'Search');
Expand Down Expand Up @@ -110,7 +110,7 @@
<hr class="footer"/><address class="footer"><small>
Generated by &#160;<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.17
</a> 1.8.18
</small></address>
</body>
</html>
6 changes: 3 additions & 3 deletions docs/html/Chain_8h.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.17"/>
<meta name="generator" content="Doxygen 1.8.18"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>The proto-Nucleic-Acid Builder (pNAB): Chain.h File Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
Expand Down Expand Up @@ -36,7 +36,7 @@
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.17 -->
<!-- Generated by Doxygen 1.8.18 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
var searchBox = new SearchBox("searchBox", "search",false,'Search');
Expand Down Expand Up @@ -165,7 +165,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#a44e8f85d5ae7b56b104cf8f8
<hr class="footer"/><address class="footer"><small>
Generated by &#160;<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.17
</a> 1.8.18
</small></address>
</body>
</html>
10 changes: 5 additions & 5 deletions docs/html/Chain_8h_source.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.17"/>
<meta name="generator" content="Doxygen 1.8.18"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>The proto-Nucleic-Acid Builder (pNAB): Chain.h Source File</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
Expand Down Expand Up @@ -36,7 +36,7 @@
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.17 -->
<!-- Generated by Doxygen 1.8.18 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
var searchBox = new SearchBox("searchBox", "search",false,'Search');
Expand Down Expand Up @@ -86,8 +86,8 @@
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span>&#160;<span class="preprocessor">#include &lt;openbabel/generic.h&gt;</span></div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span>&#160;<span class="preprocessor">#include &lt;openbabel/obiter.h&gt;</span></div>
<div class="line"><a name="l00013"></a><span class="lineno"> 13</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="Containers_8h.html">Containers.h</a>&quot;</span></div>
<div class="line"><a name="l00014"></a><span class="lineno"><a class="line" href="Chain_8h.html#a44e8f85d5ae7b56b104cf8f87cb4e78e"> 14</a></span>&#160;<span class="preprocessor">#define KJ_TO_KCAL 0.239006</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"> 15</span>&#160; </div>
<div class="line"><a name="l00014"></a><span class="lineno"> 14</span>&#160;<span class="preprocessor">#define KJ_TO_KCAL 0.239006</span></div>
<div class="line"><a name="l00015"></a><span class="lineno"><a class="line" href="Chain_8h.html#a44e8f85d5ae7b56b104cf8f87cb4e78e"> 15</a></span>&#160; </div>
<div class="line"><a name="l00016"></a><span class="lineno"> 16</span>&#160;<span class="keyword">namespace </span><a class="code" href="namespacePNAB.html">PNAB</a> {</div>
<div class="line"><a name="l00017"></a><span class="lineno"> 17</span>&#160; </div>
<div class="line"><a name="l00034"></a><span class="lineno"><a class="line" href="classPNAB_1_1Chain.html"> 34</a></span>&#160; <span class="keyword">class </span><a class="code" href="classPNAB_1_1Chain.html">Chain</a> {</div>
Expand Down Expand Up @@ -201,7 +201,7 @@
<hr class="footer"/><address class="footer"><small>
Generated by &#160;<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.17
</a> 1.8.18
</small></address>
</body>
</html>
6 changes: 3 additions & 3 deletions docs/html/ConformationSearch_8cpp.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.17"/>
<meta name="generator" content="Doxygen 1.8.18"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>The proto-Nucleic-Acid Builder (pNAB): ConformationSearch.cpp File Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
Expand Down Expand Up @@ -36,7 +36,7 @@
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.17 -->
<!-- Generated by Doxygen 1.8.18 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
var searchBox = new SearchBox("searchBox", "search",false,'Search');
Expand Down Expand Up @@ -117,7 +117,7 @@
<hr class="footer"/><address class="footer"><small>
Generated by &#160;<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.17
</a> 1.8.18
</small></address>
</body>
</html>
6 changes: 3 additions & 3 deletions docs/html/ConformationSearch_8h.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.17"/>
<meta name="generator" content="Doxygen 1.8.18"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>The proto-Nucleic-Acid Builder (pNAB): ConformationSearch.h File Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
Expand Down Expand Up @@ -36,7 +36,7 @@
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.17 -->
<!-- Generated by Doxygen 1.8.18 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
var searchBox = new SearchBox("searchBox", "search",false,'Search');
Expand Down Expand Up @@ -159,7 +159,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#aa1487dae81baa2e0a5643e7b
<hr class="footer"/><address class="footer"><small>
Generated by &#160;<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.17
</a> 1.8.18
</small></address>
</body>
</html>
10 changes: 5 additions & 5 deletions docs/html/ConformationSearch_8h_source.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.17"/>
<meta name="generator" content="Doxygen 1.8.18"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>The proto-Nucleic-Acid Builder (pNAB): ConformationSearch.h Source File</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
Expand Down Expand Up @@ -36,7 +36,7 @@
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.17 -->
<!-- Generated by Doxygen 1.8.18 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
var searchBox = new SearchBox("searchBox", "search",false,'Search');
Expand Down Expand Up @@ -82,8 +82,8 @@
<div class="line"><a name="l00007"></a><span class="lineno"> 7</span>&#160; </div>
<div class="line"><a name="l00008"></a><span class="lineno"> 8</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="Chain_8h.html">Chain.h</a>&quot;</span></div>
<div class="line"><a name="l00009"></a><span class="lineno"> 9</span>&#160; </div>
<div class="line"><a name="l00010"></a><span class="lineno"><a class="line" href="ConformationSearch_8h.html#aa1487dae81baa2e0a5643e7b571633a0"> 10</a></span>&#160;<span class="preprocessor">#define BOLTZMANN 0.0019872041 // kcal/(mol.K)</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"> 11</span>&#160; </div>
<div class="line"><a name="l00010"></a><span class="lineno"> 10</span>&#160;<span class="preprocessor">#define BOLTZMANN 0.0019872041 // kcal/(mol.K)</span></div>
<div class="line"><a name="l00011"></a><span class="lineno"><a class="line" href="ConformationSearch_8h.html#aa1487dae81baa2e0a5643e7b571633a0"> 11</a></span>&#160; </div>
<div class="line"><a name="l00012"></a><span class="lineno"> 12</span>&#160;<span class="keyword">namespace </span><a class="code" href="namespacePNAB.html">PNAB</a> {</div>
<div class="line"><a name="l00060"></a><span class="lineno"><a class="line" href="classPNAB_1_1ConformationSearch.html"> 60</a></span>&#160; <span class="keyword">class </span><a class="code" href="classPNAB_1_1ConformationSearch.html">ConformationSearch</a> {</div>
<div class="line"><a name="l00061"></a><span class="lineno"> 61</span>&#160; </div>
Expand Down Expand Up @@ -188,7 +188,7 @@
<hr class="footer"/><address class="footer"><small>
Generated by &#160;<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.17
</a> 1.8.18
</small></address>
</body>
</html>
6 changes: 3 additions & 3 deletions docs/html/Containers_8cpp.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.17"/>
<meta name="generator" content="Doxygen 1.8.18"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>The proto-Nucleic-Acid Builder (pNAB): Containers.cpp File Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
Expand Down Expand Up @@ -36,7 +36,7 @@
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.17 -->
<!-- Generated by Doxygen 1.8.18 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
var searchBox = new SearchBox("searchBox", "search",false,'Search');
Expand Down Expand Up @@ -106,7 +106,7 @@
<hr class="footer"/><address class="footer"><small>
Generated by &#160;<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.17
</a> 1.8.18
</small></address>
</body>
</html>
6 changes: 3 additions & 3 deletions docs/html/Containers_8h.html
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.17"/>
<meta name="generator" content="Doxygen 1.8.18"/>
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<title>The proto-Nucleic-Acid Builder (pNAB): Containers.h File Reference</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
Expand Down Expand Up @@ -36,7 +36,7 @@
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.17 -->
<!-- Generated by Doxygen 1.8.18 -->
<script type="text/javascript">
/* @license magnet:?xt=urn:btih:cf05388f2679ee054f2beb29a391d25f4e673ac3&amp;dn=gpl-2.0.txt GPL-v2 */
var searchBox = new SearchBox("searchBox", "search",false,'Search');
Expand Down Expand Up @@ -197,7 +197,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#ae71449b1cc6e6250b91f5391
<hr class="footer"/><address class="footer"><small>
Generated by &#160;<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.17
</a> 1.8.18
</small></address>
</body>
</html>
Loading

0 comments on commit 77ea54b

Please sign in to comment.