source file for my virtula env in VDI

GeoscienceAustralia · Jul 2, 2020 · da26eaa · da26eaa
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commit da26eaa
Showing 1 changed file with 22 additions and 0 deletions.
diff --git a/vdi_env.sh b/vdi_env.sh
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+# In VDI,  source this file to setup virtual env for hiperseis
+
+git pull
+
+module purge
+
+module load pbs  python3/3.6.7  hdf5/1.8.14p  openmpi/3.1.3  geos/3.5.0  proj/4.9.3  netcdf/4.3.3.1p 
+
+
+module list
+# output will be 
+# 1) pbs                    3) szip/2.1               5) netcdf/4.3.3.1p        7) python3/3.6.7          9) geos/3.5.0
+# 2) openmpi/3.1.3          4) hdf5/1.8.14p           6) intel-mkl/2018.2.199   8) proj/4.9.3
+
+which python3
+python3 -V
+
+source /g/data/ha3/Passive/Software/VENV/vdi_para_h5py/bin/activate
+
+
+# Run unit-tests may take 10+ minutes to complete
+# pytest -v tests/